Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0328 ATGGCAACAGCATCGTCGTCGTCGTCGTCGATTCTACAGCAAGAGCAGATGCAACAAGCAGGTGCAGGAGAGACTCAGATTCCAATGACTACCCCAGAACCTGTTCCAACCCCTAGTGCTTGGAAATCCTCGGGTTCTATTTGCCCTTTCTTAGTTGTCATTATTGTGCTCACGGTTCTTGCTGTTCTTTCCTGCTATATGGGTCGCATGTGGAACCGAAGGCCACTAACCCCTTTGGAGAGCATCCAGAACAGAAGCTGCTTTGGCTGGCTCAAGCTCATGTGTCGACGCTCTGTTACACACGCTGAAGTTCGAAGCGTTAATAAGCCGGTGACCATGGTTTCTGCTAAACAGAATAATGATTGTAAAGTTACAGATGATTTTTTGCCGTACATTGAGATTGACATGTCAAAGCTTCTTCAAGTTGATCAACTTAAGCAATTAAGGGACGTTTTTGCTCGATTTGACATGGATTCCGACGGCAGCCTAACCGTCCTAGAGCTAGCGGCGCTGCTCCGGTCGCTTGGGCTCAAGCCAACGGGTGACCAAATCCACGCGCTATTAGCCACCATGGACTCCAACAGCAACGGCTCGGTGGAGTTCGATGAATTGGTGAGAGCCATATCGCCGGACATTAACGAAGAGATATTAGTGAATCAAGAGCAGCTTCTAGAGGTTTTCAAGAGCTTCGATCGAGACGGAAATGGCTACATATCGGCGGCTGAGTTAGCCGGAGCAATGGCCAAAATGGGTCAGCCTCTCACCTACCGAGAGCTCACGCAGATGATCAAAGATGCTGACGTGGACGGCGACGGCGTCATTAGCTTCAATGAGTTCGCCACTGTAATGGCCAAGTCGGCCTCTGATTTCTTAGGCCTTCCACCGCGATTTCCATAG 897 0.4972 MATASSSSSSILQQEQMQQAGAGETQIPMTTPEPVPTPSAWKSSGSICPFLVVIIVLTVLAVLSCYMGRMWNRRPLTPLESIQNRSCFGWLKLMCRRSVTHAEVRSVNKPVTMVSAKQNNDCKVTDDFLPYIEIDMSKLLQVDQLKQLRDVFARFDMDSDGSLTVLELAALLRSLGLKPTGDQIHALLATMDSNSNGSVEFDELVRAISPDINEEILVNQEQLLEVFKSFDRDGNGYISAAELAGAMAKMGQPLTYRELTQMIKDADVDGDGVISFNEFATVMAKSASDFLGLPPRFP 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0328 298 ProSitePatterns EF-hand calcium-binding domain. 231 243 IPR018247 -
Dere14g0328 298 ProSitePatterns EF-hand calcium-binding domain. 192 204 IPR018247 -
Dere14g0328 298 ProSiteProfiles EF-hand calcium-binding domain profile. 179 214 IPR002048 GO:0005509
Dere14g0328 298 SUPERFAMILY EF-hand 139 284 IPR011992 -
Dere14g0328 298 CDD EFh 222 284 IPR002048 GO:0005509
Dere14g0328 298 FunFam Probable calcium-binding protein CML16 137 289 - -
Dere14g0328 298 ProSiteProfiles EF-hand calcium-binding domain profile. 143 178 IPR002048 GO:0005509
Dere14g0328 298 Pfam EF-hand domain pair 146 208 IPR002048 GO:0005509
Dere14g0328 298 Pfam EF-hand domain pair 221 283 IPR002048 GO:0005509
Dere14g0328 298 PANTHER CALCIUM BINDING PROTEIN 219 283 - -
Dere14g0328 298 Gene3D - 90 213 - -
Dere14g0328 298 ProSiteProfiles EF-hand calcium-binding domain profile. 254 289 IPR002048 GO:0005509
Dere14g0328 298 MobiDBLite consensus disorder prediction 1 26 - -
Dere14g0328 298 ProSiteProfiles EF-hand calcium-binding domain profile. 218 253 IPR002048 GO:0005509
Dere14g0328 298 Gene3D - 214 291 - -
Dere14g0328 298 MobiDBLite consensus disorder prediction 1 38 - -
Dere14g0328 298 SMART efh_1 222 250 IPR002048 GO:0005509
Dere14g0328 298 SMART efh_1 147 175 IPR002048 GO:0005509
Dere14g0328 298 SMART efh_1 258 286 IPR002048 GO:0005509
Dere14g0328 298 SMART efh_1 183 211 IPR002048 GO:0005509
Dere14g0328 298 ProSitePatterns EF-hand calcium-binding domain. 267 279 IPR018247 -
Dere14g0328 298 ProSitePatterns EF-hand calcium-binding domain. 156 168 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0328 Dere-ChrDere14 3439894 3441778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0328 143 293 EF-hand Containing Proteins AT1G18530 78.808 3.99e-88 258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere14g0328 14 3439894 3441778 Dere14g0328 14 3439894 3441778 ECH