Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g2000 ATGAGGCTATGGCAGAGAGTCGCCGGAGCTTTGAAAGATAGAAACAGCGTCTGGGTGGCTCAACTTTCTCGCCGCACCTCCTTCCGCAACCCCGATCTCGAAGCCGCCATCATCAAAGCCACAAGCCACGATCAACATCGCATCGATTGCAAGAACGTTCAGCGAGTCTTCCAGTGGGTTCGCACCTCTCCTTTGTACCTCAAGCCCCTCATTTGGGCTCTTGCCATGAGAATGCAAAAGACTCGAAGCTGGGTCGTTGCTCTGAAGGGCTTGATGCTCATGCACGGCATCTTCTGTTGTGATATTGCCAATGTCCAAAAGTTGGGTCGATTGCCCTTTGACTTGTCCAATTTCAGCGATGAGCATATGAACCCAGAAAGGGTTTGGGCTTATAATGCCTTTGTTCGTTCCTACTTTGCATATCTGGACCAGAAATCATCCTTCATCTGGATGGAGTTCAAAAGACAGACCAAACAGGGGAAGAAAACAGAGGAGACATTGATGCAAGAATTGGAGAGATTGCAGGCAATGCAGGGTTTGATTGATATGCTGCTTCAGATTAAACCTGACATTTTGAATTCCCATATGGGTCTTATTCTTGAAGCTATGGATTGCGTTGTTGTTGAGCTCTTCGATGTGTATAGTAAATTTTGCAAAGGGATTGCTCGAGCTCTCTTGAGGATATATGATATTGGTGGGAAGGTGGAAGCGAGTGTTGGGCTTAAGGTTCTTCAGAAAGCAGCAATCCAAAGCGATCGGCTCGCCTTGTACTTTGATTTCTGCAGGGAAATTGGTGTCCTCAATGCCTCTCAGTGCCCCAAAATGGAGCGATTCCCTGAAGGGTATATGCAAGATCTGGAGAAAATCATCAATGGGGATTATGAGATGGAAAGTTTGAAGGGTGATAACGATGAGGACAAGGCCATTGTGCTGAGGAACAGCAGTGTAAATGCCATTGCCTGCATGGCTGCACACAAGGAATCAGAAAATGGTTTGAAGACAGTGATTACAGACAAATGGGAGGTGTTTGATGATGAAATGGTGGTTGATGATGGAGCAAAAGCTTTCGGTGGTGCAAAAGCTATTTTCTCAACCAACCCTTTTGAAGAATCATATAGCATCGTTCCTTATCAAGCAGTTCATAATCAAGTTCTTCCAGATTTAATTAGTTTTTAG 1176 0.4524 MRLWQRVAGALKDRNSVWVAQLSRRTSFRNPDLEAAIIKATSHDQHRIDCKNVQRVFQWVRTSPLYLKPLIWALAMRMQKTRSWVVALKGLMLMHGIFCCDIANVQKLGRLPFDLSNFSDEHMNPERVWAYNAFVRSYFAYLDQKSSFIWMEFKRQTKQGKKTEETLMQELERLQAMQGLIDMLLQIKPDILNSHMGLILEAMDCVVVELFDVYSKFCKGIARALLRIYDIGGKVEASVGLKVLQKAAIQSDRLALYFDFCREIGVLNASQCPKMERFPEGYMQDLEKIINGDYEMESLKGDNDEDKAIVLRNSSVNAIACMAAHKESENGLKTVITDKWEVFDDEMVVDDGAKAFGGAKAIFSTNPFEESYSIVPYQAVHNQVLPDLISF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g2000 391 FunFam Putative clathrin assembly protein 7 153 - -
Dere13g2000 391 Pfam ANTH domain 32 291 IPR011417 GO:0005543
Dere13g2000 391 SUPERFAMILY ENTH/VHS domain 32 149 IPR008942 -
Dere13g2000 391 CDD ANTH_N_AP180_plant 33 148 - -
Dere13g2000 391 SUPERFAMILY GAT-like domain 168 291 - -
Dere13g2000 391 SMART enth_2 31 161 IPR013809 -
Dere13g2000 391 ProSiteProfiles ENTH domain profile. 25 156 IPR013809 -
Dere13g2000 391 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 308 IPR045192 GO:0048268|GO:0072583
Dere13g2000 391 Gene3D ANTH domain 154 304 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Dere13g2000 391 Gene3D - 6 153 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g2000 Dere-ChrDere13 27177979 27179154 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g2000 13 27177979 27179154 Dere13g2000 13 27177979 27179154 ECH