Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1930 ATGACGAGCTTGATCGGGCTAATCAATAAAATTCAACGGGCGTGCACAGTTTTAGGTGACCACGGTGGCGAGGGCTTGTCCCTCTGGGAGGCTCTTCCCTCGGTGGCTGTCGTCGGAGGCCAGAGTTCAGGGAAATCGTCTGTGTTGGAAAGTGTGGTGGGAAGGGATTTTCTGCCTCGAGGATCTGGCATTGTCACAAGGAGGCCACTAGTGCTTCAACTTCATAAGACTGAAGATGGGCAACAAGAATACGCTGAGTTTCTCCATGCAACTAGAAAGAGATTCACTGACTTTGCTGCTGTGAGGAAGGAAATTGCAGATGAAACGGATCGTATAACTGGGAAGACAAAGCAAATTTCTAATATTCCTATTCACCTCAGCATATATTCTCCACATGTTGTAAATTTAACCCTTATAGATCTTCCTGGATTGACGAAGGTTGCAGTAGAGGGACAAGCAGACACTATAGTTGAAGATATTGAAAACATGGTCCGTTCTTATGTTGAGAAGCCAAACTGCATTATATTGGCTATCTCTCCCGCAAATCAAGATATTGCCACTTCAGATGCTATAAAACTTGCAAAAGAAGTTGATCCTTCAGGTGAAAGAACATTTGGAGTGTTGACGAAACTGGATCTTATGGATAAAGGAACCAATGCTATTGATGTACTTGAAGGAAGGCAATACAAGTTGCAGCATCCATGGGTTGGAATTGTGAACCGTTCACAAGCTGATATTAATAAAAATGTTGACATGATTGTTGCTCGTAAGAAGGAACGTGAATATTTCGAGACAAGCCCTGAATATGGACATTTGGCACATAAAATGGGCTCAGAATATCTTGCTAAGCTTCTATCTCAGCATCTGGAGATTGTTATCAGGCAAAAGATTCCTAGTATCATTGCTTTAATAAATAAGACCATTGATGAGCTTAATGCAGAGTTGGACCGTATTGGCAGGCCTATCGCTGTAGACTCCGGGGCCCAACTATACACTATTTTAGAGCTGTGTCGTGCATTTGACAAAGTATTTAAGGAACACCTCGATGGAGGGCGTCCCGGTGGGGATCGGATAAATGGAGTTTTTGACCACCAATTACCTGCTGCTTTGAAAAAGCTCCCCTTTGATCGTCACCTAACCTTAAATAATGTACAAAGAGTTGTTACAGAAGCTGATGGATATCAACCCCATCTGATTGCTCCAGAGCAAGGGTACAGAAGGCTTATTGAAGGATCTATCGGCTATTTCAAAGGCCCCGCTGATGCTTCTGTAGATGCTGTTCACTTCATTCTAAAGGAACTTGTACGGAAGTCGATTTCAGAAACTGAGGAATTGAAAAGATTTCCCACACTTCAATCTGACATTGCTGCTTCAGCAAATGAAGCATTGGAAAGATTTCGAGATGAAAGCCGGAAGACAGTTCTACGGCTGGTTGATATGGAGGCTGGCTATCTAACAGTGGAATTCTTCCGGAAGATTAATGATGAACAAGGTCCAAATCGGACTGGTCCAAATGCAGAAAAGGAAAAGGAAAAGGAAAAGAGAAAGGATAAGTACACAGACAATTTCTCAGACAATCACCTCAGGAAGATAGGATCAAATGTTAGTGCCTATATCCAAATGGTTCTCGAGACACTTAGAAATTCTATACCAAAGGCTGTGGTTTATTGTCAAGTTAGAGAGGCCAGGAGATCATTACTTAACCACTTTTATGTTCAAGTTGGGAAGAGAGAGAAGGAGCAATTGAGCGCAATGTTGGATGAAGATCCGGTGCTTATGAAAAAAAGAGTACAAATTGCAAGAAGGCTTGAATTGTATAAGCAAGCTAGGGATGATATTGACTCCGTGGCTTGGAAATAA 1860 0.4226 MTSLIGLINKIQRACTVLGDHGGEGLSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGQQEYAEFLHATRKRFTDFAAVRKEIADETDRITGKTKQISNIPIHLSIYSPHVVNLTLIDLPGLTKVAVEGQADTIVEDIENMVRSYVEKPNCIILAISPANQDIATSDAIKLAKEVDPSGERTFGVLTKLDLMDKGTNAIDVLEGRQYKLQHPWVGIVNRSQADINKNVDMIVARKKEREYFETSPEYGHLAHKMGSEYLAKLLSQHLEIVIRQKIPSIIALINKTIDELNAELDRIGRPIAVDSGAQLYTILELCRAFDKVFKEHLDGGRPGGDRINGVFDHQLPAALKKLPFDRHLTLNNVQRVVTEADGYQPHLIAPEQGYRRLIEGSIGYFKGPADASVDAVHFILKELVRKSISETEELKRFPTLQSDIAASANEALERFRDESRKTVLRLVDMEAGYLTVEFFRKINDEQGPNRTGPNAEKEKEKEKRKDKYTDNFSDNHLRKIGSNVSAYIQMVLETLRNSIPKAVVYCQVREARRSLLNHFYVQVGKREKEQLSAMLDEDPVLMKKRVQIARRLELYKQARDDIDSVAWK 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1930 619 PANTHER DYNAMIN 3 616 IPR022812 -
Dere13g1930 619 SMART dynamin_3 1 249 IPR001401 GO:0003924|GO:0005525
Dere13g1930 619 CDD DLP_1 32 298 IPR001401 GO:0003924|GO:0005525
Dere13g1930 619 MobiDBLite consensus disorder prediction 502 525 - -
Dere13g1930 619 SMART GED_2 523 616 IPR003130 GO:0003924|GO:0005525
Dere13g1930 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 306 IPR027417 -
Dere13g1930 619 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 58 67 IPR019762 -
Dere13g1930 619 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 29 298 IPR030381 GO:0005525
Dere13g1930 619 MobiDBLite consensus disorder prediction 496 525 - -
Dere13g1930 619 Pfam Dynamin GTPase effector domain 526 616 IPR003130 GO:0003924|GO:0005525
Dere13g1930 619 Gene3D - 1 307 IPR027417 -
Dere13g1930 619 PRINTS Dynamin signature 180 198 IPR022812 -
Dere13g1930 619 PRINTS Dynamin signature 222 241 IPR022812 -
Dere13g1930 619 PRINTS Dynamin signature 32 50 IPR022812 -
Dere13g1930 619 PRINTS Dynamin signature 57 74 IPR022812 -
Dere13g1930 619 PRINTS Dynamin signature 130 147 IPR022812 -
Dere13g1930 619 PRINTS Dynamin signature 199 215 IPR022812 -
Dere13g1930 619 FunFam dynamin-related protein 1E 1 307 - -
Dere13g1930 619 FunFam Dynamin-related protein 1C 329 596 - -
Dere13g1930 619 Pfam Dynamin central region 219 486 IPR000375 -
Dere13g1930 619 ProSiteProfiles GED domain profile. 528 619 IPR020850 -
Dere13g1930 619 Pfam Dynamin family 35 210 IPR045063 -
Dere13g1930 619 Gene3D Dynamin, middle domain 331 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1930 Dere-ChrDere13 26244066 26252681 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1930 13 26244066 26252681 Dere13g1930 13 26244066 26252681 ECH