Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1925 ATGGCCGACGCTCTCACGGTAATTCCTGCTGCCGTGCTCCGCAACCTTGCTGACAAGCTCTATGAGAAGCGCAAGAATGCTGCTCTTGAGGTCGAGGGGGTTGTGAAGCAGCTCGCTGCTGCTGGGGATCATGAAAAAATTTCGTCTGTGATCAGTTTGTTGATTTCGGAATATACTTTCTCGCCACAAGCAAATCAACGGAAGGGAGGATTGATAGGGCTAGCTGCTGCAACTGTTGGGTTGACTAATGAAGCTGCTCAGCATCTTGAGCAAATTGTGCCCCCTGTGTTAAATTCTTTCTCTGATCAAGATAGCAGAGTTCGTTATTATGCTTGTGAAGCACTATATAACATTGCTAAGGTTGTTAGAGGGGATTTCATTATATTCTTTAACAAGATCTTTGATGCCTTATGCAAGCTTTCTGCAGACTCAGATGCCAATGTACAAAGTGCTGCTCATCTCCTAGATCGGCTTGTGAAGGATATTGTGACTGAAAGCGATCAGTTCAGCATTGAAGAATTTATACCATTATTAAGGGAGCGCATGAATGTCCTGAATCCGTACGTTCGCCAGTTTCTGGTTGGGTGGATTACTGTGTTGGACAGTGTCCCAGATATTGATATGCTGGGCTTTCTTCCTGATTTTCTTGATGGCTTGTTTAATATGTTGAGTGATTCAAGTCATGAAATACGTCAACAAGCTGATTCAGCTCTTTCCGAGTTTCTTCAAGAGATTAAGAACTCTCCATCTGTAGATTATGGTCGCATGGCTGAAATACTTGTTCAGAGGGCAGGTTCCTCAGATGAATTTACTAGATTAACAGCTATCACATGGATAAATGAGTTTGTAAAACTTGGTGGAGATCAGCTTGTTCCATATTATGCTGATATTCTTGGAGCCATTTTGCCTTGCATATCCGATAAAGAAGAGAAAATTAGAGTGGTTGCTCGTGAAACCAATGAAGAGCTACGTGCAATCAGGGCTGATCCAGCTGAGGCGTTTGATGTAGGAGCTATCTTGTCCATTGCTAGGAGACAACTATCAAGTGAATGGGAAGCTACTCGAATTGAAGCTTTGCACTGGATATCGACCCTTTTAAACAAATATCGTGATGAGGTTTTGACATTTCTGAATGATATATTTGACACCCTACTGAAGGCACTTTCAGATCCTTCCAATGAGGTTGTGCTTCTGGTTCTTGATGTTCATGCATGCATTGCAAAGGATCCCCAGCACTTCCGACAGCTTGTTGTTTTCCTAGTGCACAATTTCCGGGTAGAGAATTCTCTCTTGGAGAGGCGTGGTGCTTTGATTATCCGTCGGCTTTGTGTGCTTTTGAATGCTGAAAGAGTCTACCGTGAACTCTCTACAATACTAGAAGGGGAATCAGATTTGGATTTTGCATCAATTATGGTTCAGGCATTGAATTTGATCTTACTCACATCAACGGAATTATCTGAGCTTCGAGATCTTTTAAAACAAACGCTTATAAATCCAGCTGGGAGGGATCTATATGTTTCTTTGTATGCCTCATGGTGCCATTCTCCAATGGCAATTATTAGTCTTTGTTTAGTAGCTCAGACCTATCAACATGCAAGTGCTGTGATTCAATCTCTGGTAGAGGAGGACATTAACGTTAAATTTTTGGTCCAGCTGGATAAGTTGGTTCGCTTGCTGGAAACTCCAATCTTTGCTTATCTTAGATTGCAGCTTCTTGAACCTGGAAAGTATATATGGTTATTTAAAGCATTATATGGACTTCTGATGTTGCTTCCTCAGCAAAGTGCCGCCTTTAAGATACTAAAAACACGCTTAAAAGCTGTGCCATCATATTCTTTAGATGGTGAACAACTTAAGAGAACATCATCTGGGAATCCCTACCAAATTTTTCATCAAATTTCTGGTGGATCTCAAGTCTCTGAGGATGGTGACATAAGTTTCGATGGTGGGAACTCACATAATGGAATCAATTTTGCTGCAAGGCTACAACAGTTTGAAAAAATGAAATACCAGCATCGCATGCATGCTAAAGCACAAGTACAGTTGCGCAACAATTCCACGTCATTGTCAAAGGGTTCCCAATCAGAAAGAGAGGAAGAACCAAGGCGATCGCAGTCATCTGACCTGAACGCTCCTACTTCAAGATCATCAAAGAACGGCCCGGGGCAGCTACAACTATGA 2181 0.4204 MADALTVIPAAVLRNLADKLYEKRKNAALEVEGVVKQLAAAGDHEKISSVISLLISEYTFSPQANQRKGGLIGLAAATVGLTNEAAQHLEQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNKIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVQRAGSSDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIRADPAEAFDVGAILSIARRQLSSEWEATRIEALHWISTLLNKYRDEVLTFLNDIFDTLLKALSDPSNEVVLLVLDVHACIAKDPQHFRQLVVFLVHNFRVENSLLERRGALIIRRLCVLLNAERVYRELSTILEGESDLDFASIMVQALNLILLTSTELSELRDLLKQTLINPAGRDLYVSLYASWCHSPMAIISLCLVAQTYQHASAVIQSLVEEDINVKFLVQLDKLVRLLETPIFAYLRLQLLEPGKYIWLFKALYGLLMLLPQQSAAFKILKTRLKAVPSYSLDGEQLKRTSSGNPYQIFHQISGGSQVSEDGDISFDGGNSHNGINFAARLQQFEKMKYQHRMHAKAQVQLRNNSTSLSKGSQSEREEEPRRSQSSDLNAPTSRSSKNGPGQLQL 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1925 726 Pfam Vacuolar 14 Fab1-binding region 65 161 - -
Dere13g1925 726 MobiDBLite consensus disorder prediction 673 726 - -
Dere13g1925 726 Pfam Vacuolar protein 14 C-terminal Fig4p binding 429 608 IPR021841 -
Dere13g1925 726 MobiDBLite consensus disorder prediction 678 692 - -
Dere13g1925 726 FunFam protein VAC14 homolog 126 248 - -
Dere13g1925 726 FunFam protein VAC14 homolog isoform X1 249 410 - -
Dere13g1925 726 Gene3D - 13 119 IPR011989 -
Dere13g1925 726 Gene3D - 247 416 IPR011989 -
Dere13g1925 726 Gene3D - 120 246 IPR011989 -
Dere13g1925 726 PANTHER TAX1 BINDING PROTEIN-RELATED 7 687 IPR026825 GO:0006661|GO:0070772
Dere13g1925 726 MobiDBLite consensus disorder prediction 706 726 - -
Dere13g1925 726 FunFam ARM repeat superfamily protein 6 125 - -
Dere13g1925 726 SUPERFAMILY ARM repeat 5 542 IPR016024 -
Dere13g1925 726 ProSiteProfiles HEAT repeat profile. 92 127 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1925 Dere-ChrDere13 26167198 26183193 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1925 13 26167198 26183193 Dere13g1925 13 26167198 26183193 ECH