Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1868 ATGGGTACGCTTCAGACTTGGAGAAAAGCTTATGGTGCCCTCAAAGATACCACCAAAGTTGGTCTTGCCCATGTCAACAGCGATTACGCGGATTTGGATGTTGCCATAGTCAAAGCCACGAACCACGTCGAATGCCCTCCTAAGGAGAGACACCTTAGAAAAATTCTATTTGCCACGTCCGCTATTCGGCCCCGAGCTGATGTTGCTTACTGCATTCATGCTCTTGCCCGTCGATTGGCCAAAACACGAAATTGGACGGTGGCACTTAAAACACTGATAGTCATTCATAGGCTATTGAGGGAGGGTGATCCAACCTTCAAAGAAGAATTTCTGAATTTCTCACAGAGAGGACGCATTCTCCAACTTTCTAATTTTAAGGATGACTCTAGCCCAATAGCTTGGGATTGCTCTGCCTGGGTACGCACTTATGCATTATTTTTGGAAGAAAGGCTTGAATGTTTTCGGATTTTGAAGTATGATATTGAAGCTGAGCGTTTACCCAAGCCTGCCCCAGGGCAGGAGAAGGGGTACAGCAGGACAAGGGATTTGGATAGTGAGGAGCTATTGGAGCAGTTGCCTGCTTTGCAGCAGCTTCTCTATCGGCTTATTGGTTGCAGGCCAGAAGGAGCAGCTGTTAGCAATTATGTGATACAATATGCTCTAGCTCTGGTACTGAAAGAGAGCTTTAAGATTTATTGCGCTGTTAATGATGGAATTATTAATCTTGTTGATAAGTTTTTTGAGATGCCAAGACATGAAGCTATTAAAGCCCTTGATGTCTACAAACGTGCTGGCCAGCAGGCAGCAAGTCTCTCTGATTTTTATGAAGTCTGCAAAGGATTAGAACTTGCTAGGAATTTTCAGTTTCCTGTCCTGAGGGAGCCTCCACAATCTTTTCTTACAACCATGGAAGAGTACATAAGAGAGGCACCGCGAGTGGTTACTGTGCCAACTGAGCCATTGCTTCAGTTGACATACAGACCAGAAGAAGAAGTTCCTACAACTGAAGACAGTAAAGAACCTGCTGAAGAGGAGGGGCCATCAGTGCCTGTTGATGATGTTGTATCCAATTCTGAGACTGCTGCTGCTGCTGCTCCTCCTCCTCTTCCATCTCAAAACAATTTCGACACTGGAGACTTACTAGGGTTGAATGACACTGTACCTGACGCATCATCAATAGAGGAGAGAAATGCTCTTGCCCTAGCCATTGTACCCACTGAAAATGGCATGAGGTCAGGTTTTGAATCAAGTGCTGCTCAAGCTAAAGATTTTGATCCAACTGGATGGGAGCTTGCCTTGGTCTCCACTTCAAGTAACAACATTTCTTCAGTCAATGAAAGACAATTGGCGGGTGGAATGGACTCGCTTACTCTTAACAGCTTATATGATGAAGCAGCCTATAGATCGCAGCAGCCAGTGTATGGAGCACCGGCCCCAAATCCATTTGAAGTACAGGATCCATTTGCTTTCTCAAGCAGCATCCCTCCTCCGCCTGCTGTCCAAATGGCGACAATGGCTCAGCAGCAAGCAAATCCATTTGGTCCATACCAACCTTATCAGCCACAGCTACAGCCACAGCCACAGCAGAATCTGTTGATGAGCCCTACAAATCCTTTTGGGGATGCAGGATATGGGGCATTACCTGTGAATCCAGTTTCTCACCCACAAAATAACAACAATCCATTTGGAAGTACAGGCTTGCTATAA 1707 0.4569 MGTLQTWRKAYGALKDTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILFATSAIRPRADVAYCIHALARRLAKTRNWTVALKTLIVIHRLLREGDPTFKEEFLNFSQRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAERLPKPAPGQEKGYSRTRDLDSEELLEQLPALQQLLYRLIGCRPEGAAVSNYVIQYALALVLKESFKIYCAVNDGIINLVDKFFEMPRHEAIKALDVYKRAGQQAASLSDFYEVCKGLELARNFQFPVLREPPQSFLTTMEEYIREAPRVVTVPTEPLLQLTYRPEEEVPTTEDSKEPAEEEGPSVPVDDVVSNSETAAAAAPPPLPSQNNFDTGDLLGLNDTVPDASSIEERNALALAIVPTENGMRSGFESSAAQAKDFDPTGWELALVSTSSNNISSVNERQLAGGMDSLTLNSLYDEAAYRSQQPVYGAPAPNPFEVQDPFAFSSSIPPPPAVQMATMAQQQANPFGPYQPYQPQLQPQPQQNLLMSPTNPFGDAGYGALPVNPVSHPQNNNNPFGSTGLL 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1868 568 FunFam Putative clathrin assembly protein 173 321 - -
Dere13g1868 568 Gene3D - 7 161 IPR008942 -
Dere13g1868 568 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Dere13g1868 568 MobiDBLite consensus disorder prediction 324 387 - -
Dere13g1868 568 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Dere13g1868 568 PANTHER CLATHRIN ASSEMBLY PROTEIN 6 508 IPR045192 GO:0048268|GO:0072583
Dere13g1868 568 SMART enth_2 30 161 IPR013809 -
Dere13g1868 568 MobiDBLite consensus disorder prediction 551 568 - -
Dere13g1868 568 FunFam Clathrin assembly protein AP180 6 161 - -
Dere13g1868 568 CDD ANTH_N 32 154 - -
Dere13g1868 568 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Dere13g1868 568 MobiDBLite consensus disorder prediction 511 568 - -
Dere13g1868 568 MobiDBLite consensus disorder prediction 511 536 - -
Dere13g1868 568 Gene3D ANTH domain 173 324 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Dere13g1868 568 MobiDBLite consensus disorder prediction 330 346 - -
Dere13g1868 568 SUPERFAMILY GAT-like domain 178 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1868 Dere-ChrDere13 25415642 25421867 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1868 13 25415642 25421867 Dere13g1868 13 25415642 25421867 ECH