Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1480 ATGTTATCGCAAGATTGGAATTTAATGTTGGAAGGGAAAGCATACAGGAATTCTGGATTAGATAATTGTGGAACTGAAGTTGGTCCTGCAACTTCCCAAGAGAAAGTGGGAAGTTTTGAATTCAATGAAGCGAATGAAGATGTTTATGGGATTGTAACCCATAACATCAGGAAGCCCAACTACTTAAATTTCATTCAAGCTCCGACGGTGCTTGGTGCGATGCCTTCAATGGCTCAAGGAGGATTCAGAAACTTCCCCGGCAGTCAAAACCCTGGCAGTAAATTATCCAATGGAAATCAGAATAGGCAAGCTGAACTCCCTGCCTGGAGGCAGAAGATTTTACAACAAAGAAAGTCTCTTCCGATTGCTTCAGTTGAGAAAAGACTTGTGGAAGAGGTCAGGAAGAATGATATTTTGATTATCGTTGGTGAAACTGGAAGTGGGAAGACCACACAGATTCCCCAGTTTCTGTTCGATGCTGGATTTTGTCATGACGGCAAAGTTATTGGGATAACTCAACCCAGGCGTGTTGCTGCTGTTACTGTGGCAAAACGGGTTTCTGAAGAATGTGGTGTTCAATTGGGCCAAAAAGTTGGTTACTCTGTTAGATTTGATGATGCTACTTCCGGCTCAACAAGGATTAAATACATGACTGATGGATTGCTTCTGAGGGAAGCATTGTTGGATCCATTTCTTTCAAAGTATTCTGTTATAATTGTTGATGAAGCTCATGAAAGAACTGTCCACACTGATGTCTTGATGGGCTTGCTTAAAAATGTACAGCATGCTCGGTCCAATTTTGTTTGTGATGGTCAGGGCCTTAATTTTGAAAACAAGAATGTAAAGAGTGGCATGTCATTGGAGAAAGAAAATGGTGCTCAGTGCAGCAGTTTTCTTAAAAAGCTCAACAACAGAAAGTATGCTCCATTGAAGCTAATTATCATGTCTGCAAGCCTTGATGCACGGGTTTTCTCTGAGTACTTTGGTGGTGCAAAAGCTGTTCACGTACAAGGGAGACAGTTCCCTGTGGATATATTGTATACTCGCCATGCAGAGACAGATTATTTAGATGCTGCCTTGATAACAATATTCCAGATTCATTTGGAGGAGGGCCCTGGTGATATACTAGTATTTTTAACTGGACAAGAAGAGATTGAATCTATTGAAAGGCTAATAAATGAGCGACTCAAGCAATTATCTGAAGGCAGTCAGAAGCTTCTAATTGTACCTATATTTGCAGCTCTTCCATCTGAGCAGCAAATGCGAGTCTTTGCACCAGCTCCATCTGGATTTCGCAAGGTAATATTGGCTACTAATATTGCTGAGACATCAGTAACAATTCCTGGAATCAAGTATGTAGTAGATCCTGGATTTGTGAAAGCACGCTCTTATGACCCCAGCAAAGGCATGGAATCTTTGATTGTAGTACCTACATCCAAGTCCCAGGCTCTGCAAAGGAGTGGGCGTGCAGGGCGTGAAGGACCTGGAAAATGTTTTCGTCTCTATCCAGAAAGTGAATTCGATAAACTTGAGGACTCAACAAAGCCAGAGATCAAGCGATGCAACCTCTCTAATGTCATTTTGCAGCTTAAGGCTTTGGGTGTTGATGACATATTAGGGTTTGATTTCATTGAGAAACCTTCAAGGGCAGCTATCATCAAATCATTGGAGCAGCTATTCTTGTTAGGCGCTCTAACAGATAATGGACAACTATCTGATCCAGTTGGACATCAAATGGCTGGGCTTCCCTTGGACCCTATTTATTCCAAAGCTCTTATTTTAGCTAGTCAGTTTAACTGCTTGGATGAGATGCTGATAACTGTTGCAATGCTTTCTGTGGAATCCATATTTTATGCTCCTCGTGATAAGTTAGAAGAGGCAAGAACTGCAATGAAATGCTTCTCAAGTCCAGAAGGAGACCACCTGACTTTGATTAATGTGTATCGAGCATCTAATGAATTCTTGGAAAAGAAATCAATGGGGATGAGTTACGCAAAAAGTGAAAAGGCTTTGAGAAAGTGGTGCAAGGAAAACTTTATTAATAGCCGTTCTCTTAAGCATGCTCGAGACATCCACCGGCAAATTTTGGGGCACGTTGAACATATGGGTCTGCATTTGGCTTCTTGTGGAGATGATCTGCTTCAATACCGCAGATGCCTTGCTGCTTCCTTTTTCCTCAATGCAGCTATAAAGAAGCCAGAGGGAACATACAGGGCTTTCACTAGTGGTCAGGTGGTGCAGATCCACCCTTCATCTGTACTCTTCCTTAAAAAGCCAGAGTGCATAATATTTAATGAACTGGTCCAAACTAATAACAAGTATGTTCGAAATGTAACCAGAATTGACTACCTGTGGTTAACCGAGCTGGCTCCTCAATATTATGCTATCCAGAATTAA 2397 0.4164 MLSQDWNLMLEGKAYRNSGLDNCGTEVGPATSQEKVGSFEFNEANEDVYGIVTHNIRKPNYLNFIQAPTVLGAMPSMAQGGFRNFPGSQNPGSKLSNGNQNRQAELPAWRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQIPQFLFDAGFCHDGKVIGITQPRRVAAVTVAKRVSEECGVQLGQKVGYSVRFDDATSGSTRIKYMTDGLLLREALLDPFLSKYSVIIVDEAHERTVHTDVLMGLLKNVQHARSNFVCDGQGLNFENKNVKSGMSLEKENGAQCSSFLKKLNNRKYAPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFPVDILYTRHAETDYLDAALITIFQIHLEEGPGDILVFLTGQEEIESIERLINERLKQLSEGSQKLLIVPIFAALPSEQQMRVFAPAPSGFRKVILATNIAETSVTIPGIKYVVDPGFVKARSYDPSKGMESLIVVPTSKSQALQRSGRAGREGPGKCFRLYPESEFDKLEDSTKPEIKRCNLSNVILQLKALGVDDILGFDFIEKPSRAAIIKSLEQLFLLGALTDNGQLSDPVGHQMAGLPLDPIYSKALILASQFNCLDEMLITVAMLSVESIFYAPRDKLEEARTAMKCFSSPEGDHLTLINVYRASNEFLEKKSMGMSYAKSEKALRKWCKENFINSRSLKHARDIHRQILGHVEHMGLHLASCGDDLLQYRRCLAASFFLNAAIKKPEGTYRAFTSGQVVQIHPSSVLFLKKPECIIFNELVQTNNKYVRNVTRIDYLWLTELAPQYYAIQN 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1480 798 PANTHER ATP-DEPENDENT RNA HELICASE 104 786 - -
Dere13g1480 798 Gene3D - 86 339 IPR027417 -
Dere13g1480 798 SMART ultradead3 118 346 IPR014001 -
Dere13g1480 798 MobiDBLite consensus disorder prediction 81 100 - -
Dere13g1480 798 SMART AAA_5 135 374 IPR003593 GO:0016887
Dere13g1480 798 Gene3D - 541 710 - -
Dere13g1480 798 SMART ha2_5 554 645 IPR007502 GO:0004386
Dere13g1480 798 SMART helicmild6 386 494 IPR001650 -
Dere13g1480 798 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 337 IPR014001 -
Dere13g1480 798 Pfam Helicase associated domain (HA2) 555 679 IPR007502 GO:0004386
Dere13g1480 798 MobiDBLite consensus disorder prediction 82 100 - -
Dere13g1480 798 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 717 793 IPR011709 -
Dere13g1480 798 CDD DEXHc_DHX33 120 336 - -
Dere13g1480 798 Gene3D - 340 513 IPR027417 -
Dere13g1480 798 CDD SF2_C_RHA 341 502 - -
Dere13g1480 798 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 236 245 IPR002464 -
Dere13g1480 798 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 534 IPR001650 -
Dere13g1480 798 Pfam Helicase conserved C-terminal domain 363 493 IPR001650 -
Dere13g1480 798 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 340 514 - -
Dere13g1480 798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 683 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1480 Dere-ChrDere13 19949986 19957064 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1480 13 19949986 19957064 Dere13g1480 13 19949986 19957064 ECH