Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1275 ATGGCTCTATCTCGTATAGCTTCTTCTTCTTCTTCGTCCCGATCTGATCTACTCAAGCCCATTTCGACCGCATTATCCTCCGCCCCTTCTCTCCGCCGTTCGATTTCCTCTGCTCCCGATGACTCCACCACTCTCACCATTGAGACCAATAATTCATTCACTGCCCACAATTGCGACACACCTTCACGCTCCGTCGACACCACCCCGAAGGAGCTTATGTCCTTCTTCAGGGACATGGCCACGATGCGACGGATGGAGATTGCTGCCGATTCCCTCTACAAGTCTAAGCTCATCCGAGGGTTCTGTCACTTGTACGATGGCCAGGAAGCAGTGGCCGCGGGCATGGAGGCAGCCATTACCAAGAAAGATTGCATAATAACATCTTACCGGGATCACTGTACCTTCCTTGGGCGCGGTGGAACCCTATTGGAGATATTCGCGGAGCTCATGGGTCGTCAAGATGGGTGCGCAAAAGGAAAGGGTGGCTCTATGCACTTCTATCGGAAGGAGGCTGGATTTTATGGCGGTCATGGGATCGTTGGGGCTCAGATACCGCTGGGATGCGGATTAGCTTTTGCTCAGAAGTACTGTAAAGATGAGAATGTGACATTCGCTCTGTACGGTGATGGTGCGGCAAATCAGGGGCAGCTGTTCGAGGCGCTAAACATCGCGGCGCTTTGGGATCTCCCTGCCATTTTGGTCTGCGAGAACAATCATTACGGGATGGGGACGGCAGAGTGGAGAGCTGCCAAGAGTCCTGCTTATTACAAGCGTGGGGATTATGTTGCTGGATTGAAGGTAGATGGCATGGATGTTCTTGCTGTAAAACAGGCATGCAAATTTGCAAAGGATTATGCTTTGAAGAACGGGCCCATTATTCTTGAAATGGACACCTATAGGTACCACGGACATTCAATGTCTGATCCTGGCAGCACATATCGCACACGTGATGAGGTTTCTGGCGTGAGACAGGAGCGTGATCCGATTGAGAGAGTTAGAAAGCTGTTATTGCAACATGAGATTGCTGCTGAAACCGAACTCAAGGACATTGAAAAGGAAGTCAAAAAGGAAGTTGATGAAGCTATCACTAAAGCAAAGGAGAGCTCGTTGCCAGACCCATCTGAACTATTTACCAATGTATATGTTAGAGGTTTAGGGGTTGAGGCATGTGGAGCTGATAGGAAGGAAGTTAGAGTTACTTTACCATGA 1209 0.4955 MALSRIASSSSSSRSDLLKPISTALSSAPSLRRSISSAPDDSTTLTIETNNSFTAHNCDTPSRSVDTTPKELMSFFRDMATMRRMEIAADSLYKSKLIRGFCHLYDGQEAVAAGMEAAITKKDCIITSYRDHCTFLGRGGTLLEIFAELMGRQDGCAKGKGGSMHFYRKEAGFYGGHGIVGAQIPLGCGLAFAQKYCKDENVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVAGLKVDGMDVLAVKQACKFAKDYALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEVSGVRQERDPIERVRKLLLQHEIAAETELKDIEKEVKKEVDEAITKAKESSLPDPSELFTNVYVRGLGVEACGADRKEVRVTLP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1275 402 MobiDBLite consensus disorder prediction 305 324 - -
Dere13g1275 402 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 38 384 - -
Dere13g1275 402 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 62 383 IPR029061 -
Dere13g1275 402 Coils Coil 340 360 - -
Dere13g1275 402 CDD TPP_E1_PDC_ADC_BCADC 75 365 - -
Dere13g1275 402 Gene3D - 31 396 - -
Dere13g1275 402 FunFam Pyruvate dehydrogenase E1 component subunit alpha 34 395 - -
Dere13g1275 402 Pfam Dehydrogenase E1 component 78 373 IPR001017 GO:0016624
Dere13g1275 402 NCBIfam pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 70 382 IPR017597 GO:0004739|GO:0006086|GO:0043231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1275 Dere-ChrDere13 17593326 17597867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1275 1 402 Acyl Lipid Metabolism Gene Families AT1G24180 77.363 0.0 655
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1275 13 17593326 17597867 Dere13g1275 13 17593326 17597867 ECH