Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1268 ATGTTCCTTATATACTCTTCATTCTTCTCTTTCTTTCTCATTTTTTCTCTCAAGCCAAACACTTCTTTTCCTGCAAATCAATTAAACATGAAACTCCATCTTCTGTTCTTGGCCATTTCTCTATCTCTCTCCCTCTCGTTCACTCCAATTTCAGCTCGATTATTCCCAAATATATCATCTATACCCCCTTGGATTGCCAAGAACGCGCCTCCTGGCGCGTGGGACGCCTTTCAGAACTTCACCGACTGCAGTCCGGGGAATACGTACGACGGGTTGTCGAAGCTCAAAAGTTACTTCCACCGCTTCGGCTACATTCCTGATTCTCCCTCCAACTTCACCGATGACTTCGACGACGTTCTTGAATCCGCCGTTAAGACGTACCAGAAGAACTTCAATCTCAACGTCACCGGCCAGCTCGACCAGAACACTCTCCAGCAGATTGTCCGTCCGCGATGCGGTGTTGCGGATATAGTCAACGGAACCAGCACCATGAACTCCGGCAAGGAGAATACCTCAGCCGCGAGCAACAGCACGCGCTTCCACACTGTCTCGCACTACACGTTCTTCCCCGGGAAGCCGCGGTGGCCCGATGGAACTCAAACTCTGACCTACGCGTTCTTGCCGGACAACGGCCTAACGGACGACGTGAAGAACGTGTTCGCCACCGCCTTCGACCGGTGGTCGGAGGTGACGACGCTGACATTCACGGAGGCCTCGTCGTACCAAACGGCTGACATCAAGATAGCGTTCTACTCCGGGGACCACGGGGACGGAGAGCCATTCGACGGGGTTTTAGGGACACTGGCGCACGCGTTTTCGCCGACGAACGGGAGGTTCCATCTGGATGCTGCGGAGGACTGGGTGGTATCCGGTGACGTAACGCAGTCGTCGCTGTCGACGGCGGTGGATCTGGAATCCGTGGCCGTACACGAGATCGGCCACTTGCTAGGATTGGGGCACTCGTCGGTGCAGGAGGCGATCATGTACCCGACGATAACGTCGCGGACGAGGAAGGTGAATCTGGCGGACGATGATATTCAGGGGATTCAGCAGCTGTACGGTTCGAACCCTAATTACAATGGCACCACCACCACGACGTCGTCTCAGCAGAACGACTCCAGCCATGGAGGACGACGACTCAGTGAGGTGGGGTCCACGTGGGGCCTTCTCGTTTTGTTAGCCGTTGGATTTACACATTTGATTTTATAG 1209 0.5426 MFLIYSSFFSFFLIFSLKPNTSFPANQLNMKLHLLFLAISLSLSLSFTPISARLFPNISSIPPWIAKNAPPGAWDAFQNFTDCSPGNTYDGLSKLKSYFHRFGYIPDSPSNFTDDFDDVLESAVKTYQKNFNLNVTGQLDQNTLQQIVRPRCGVADIVNGTSTMNSGKENTSAASNSTRFHTVSHYTFFPGKPRWPDGTQTLTYAFLPDNGLTDDVKNVFATAFDRWSEVTTLTFTEASSYQTADIKIAFYSGDHGDGEPFDGVLGTLAHAFSPTNGRFHLDAAEDWVVSGDVTQSSLSTAVDLESVAVHEIGHLLGLGHSSVQEAIMYPTITSRTRKVNLADDDIQGIQQLYGSNPNYNGTTTTTSSQQNDSSHGGRRLSEVGSTWGLLVLLAVGFTHLIL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1268 402 PANTHER MATRIX METALLOPROTEINASE 72 364 - -
Dere13g1268 402 MobiDBLite consensus disorder prediction 352 379 - -
Dere13g1268 402 PRINTS Matrixin signature 307 332 IPR021190 GO:0004222|GO:0006508|GO:0008270
Dere13g1268 402 PRINTS Matrixin signature 341 354 IPR021190 GO:0004222|GO:0006508|GO:0008270
Dere13g1268 402 PRINTS Matrixin signature 220 235 IPR021190 GO:0004222|GO:0006508|GO:0008270
Dere13g1268 402 PRINTS Matrixin signature 244 272 IPR021190 GO:0004222|GO:0006508|GO:0008270
Dere13g1268 402 PRINTS Matrixin signature 147 160 IPR021190 GO:0004222|GO:0006508|GO:0008270
Dere13g1268 402 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 188 358 - -
Dere13g1268 402 Gene3D Collagenase (Catalytic Domain) 82 360 IPR024079 GO:0008237
Dere13g1268 402 Pfam Matrixin 199 354 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Dere13g1268 402 Pfam Putative peptidoglycan binding domain 92 146 IPR002477 -
Dere13g1268 402 SUPERFAMILY PGBD-like 82 157 IPR036365 -
Dere13g1268 402 FunFam Metalloendoproteinase 1 82 359 - -
Dere13g1268 402 SMART col_5 191 355 IPR006026 GO:0006508|GO:0008237|GO:0008270
Dere13g1268 402 CDD ZnMc_MMP 194 354 IPR033739 GO:0008237|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1268 Dere-ChrDere13 17520110 17521318 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1268 13 17520110 17521318 Dere13g1268 13 17520110 17521318 ECH