Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1208 ATGGCATTGTGGCAACACAAGTTTGTGTTTGCAGGTCTCTTAATCATCTGCTTAGCCATTGAGGTTTCTTCGCATAACAAGCGTTATACACCTCCGAGTGTCACGCCTTTGACAGATTCTTTTCCTCGTGTCCCGATTGATCGAGGGTTTTCCAAATTTTTTGGGGCCTCAAATATTCGATTTCTCAGTAACGGGTCCATGGTCACTCTGGCTCTTGACAAAACTTCAGGCGCTGGTTTGGTCTCTCAAAGCAGATACTACTATGGATTCTTCAGTGCCCGCATTAAGCTACCTGCTGGTCTTACATCTGGTGTTGTAGTAGCCTTCTATTTGTCTAATGCAGATAAGTTTCCTCACAACCATGATGAGATAGATATTGAGCTTCTTGGGCATGAGAAGAGGAACGACTGGGTTATTCAGACGAATGTGTATGCCAATGGAAGTGTCAGCACTGGAAGAGAAGAAAAGTTCTATCTTTGGTTTGACCCCACACAACAGCACCATTACTACAGCATCTTATGGAACAACTATCACACAGTGTTTTTAGTGGACAATATTCCAGTGAGGGAGTTCATCCACAGCAATAAATATCCTTCAGTATACCCATCAAAGCCAATGTCAGTGTATGCCACAATATGGGATGCATCAGAATGGGCAACACATGGAGGAAAATACCCAGTGAATTATAAGTATGCTCCATTTGTTGTCTCATTTACAGAAATGGAATCAAGTGGCTGCATAATATCCAGTAATCCCACGGAAACTTCATCATCTTCTTCATGTTCAATGGCTTCAAGTCCTTCAAGCTTGGACCCTGTGAATGGACCAGAGTTTGCAAAGCTATCTCAGCAGCAGATGGCAGCCATGGATTGGGCAAGAAGAAAACTCTTGTTTTACTCTTACTGTAATGACAAACCCAGGTTCAAGGTCTTGCCTCCAGAATGCCACTGA 951 0.4311 MALWQHKFVFAGLLIICLAIEVSSHNKRYTPPSVTPLTDSFPRVPIDRGFSKFFGASNIRFLSNGSMVTLALDKTSGAGLVSQSRYYYGFFSARIKLPAGLTSGVVVAFYLSNADKFPHNHDEIDIELLGHEKRNDWVIQTNVYANGSVSTGREEKFYLWFDPTQQHHYYSILWNNYHTVFLVDNIPVREFIHSNKYPSVYPSKPMSVYATIWDASEWATHGGKYPVNYKYAPFVVSFTEMESSGCIISSNPTETSSSSSCSMASSPSSLDPVNGPEFAKLSQQQMAAMDWARRKLLFYSYCNDKPRFKVLPPECH 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1208 316 SUPERFAMILY Concanavalin A-like lectins/glucanases 50 315 IPR013320 -
Dere13g1208 316 Gene3D - 28 315 - -
Dere13g1208 316 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 46 315 IPR044791 GO:0004553
Dere13g1208 316 Pfam Glycosyl hydrolases family 16 57 230 IPR000757 GO:0004553|GO:0005975
Dere13g1208 316 PIRSF EndGlu_transf 13 316 IPR016455 GO:0010411|GO:0016762|GO:0042546
Dere13g1208 316 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 2 238 IPR000757 GO:0004553|GO:0005975
Dere13g1208 316 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 279 315 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1208 Dere-ChrDere13 16797858 16800337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1208 3 316 Glycoside Hydrolase AT1G10550 62.102 5.20e-148 417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1208 13 16797858 16800337 Dere13g1208 13 16797858 16800337 ECH