Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1175 ATGGCAGGGAAGGATTTTGACACCATGAGAAGGAGGGTGGCTTCTATAGCCAACCATCTCGTTCCCTTTCACTCGTCGCTTAATGGGGCTGTGGAGCTGTGTAATACTTCCATGAAAGATAGCTACCACAGGATTCACGGTGAAGTTCCCTCTCATGAGGTGGTTTGGAGGATCGCTTCGGATGACTCTGGCAAGGAGTTTACTGACATTGTATACGAGAAGGCTGAAGGAGAAGCCATAGCAAAGATCACTATTAATAGGCCAGAAAGAAGGAATGCCTTCCGGCCCCATACCATTAAAGAGCTTATTCGTGCTTTCAATGATGCCAGGGATGATAGCTCTGTAGGGGTCATCGTTCTTACTGGGAAGGGAACCAAGGCATTCTGTAGTGGTGGTGACCAGGATTTGAGAACTAAAGATGGTTATGCAGATTTTGAAAATATTGGCCGCCTTAATGTTTTAGACTTGCAGTTGCAGATCCGTCGTCTTCCAAAACCTGTTATTGCTATGGTAGCAGGTTATGCTGTTGGAGGAGGACATATATTACATATGGTCTGTGATCTAACTATAGCAGCAGATAATGCTATATTTGGCCAAACTGGTCCTAAGGTAGGAAGCTTTGATGCTGGTTATGGAAGTTCCATCATGTCACGTTTGGTAGGACCCAAAAAAGCACGTGAAATGTGGTTTCTCACAAGGTTTTATACTGCTGTTGAGGCAGAGAAAATGGGACTAGTCAACACTGTTGTACCTCTAGAGAACTTAGAGAAAGAAACAGTAAAATGGTGTCGTGAGATTCTGAGGAACAGCCCAACAGCTATTCGGGTTCTCAAGTCAGCTCTTAATGCAGTGGACGATGGCCAAGCTGGACTTCAGGAACTAGGTGGAAACGCCACACTCATATTTTATGGCACTGAAGAAGCTAACGAGGGAAAAACAGCATTTATGCAACGTAGAGCCCCTGATTTCTCCAAGTTTCATAGGCGACCTTAG 993 0.4491 MAGKDFDTMRRRVASIANHLVPFHSSLNGAVELCNTSMKDSYHRIHGEVPSHEVVWRIASDDSGKEFTDIVYEKAEGEAIAKITINRPERRNAFRPHTIKELIRAFNDARDDSSVGVIVLTGKGTKAFCSGGDQDLRTKDGYADFENIGRLNVLDLQLQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYTAVEAEKMGLVNTVVPLENLEKETVKWCREILRNSPTAIRVLKSALNAVDDGQAGLQELGGNATLIFYGTEEANEGKTAFMQRRAPDFSKFHRRP 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1175 330 FunFam 1,4-dihydroxy-2-naphthoyl-CoA synthase 50 267 - -
Dere13g1175 330 Gene3D - 52 269 - -
Dere13g1175 330 FunFam 1,4-dihydroxy-2-naphthoyl-CoA synthase 268 318 - -
Dere13g1175 330 Pfam Enoyl-CoA hydratase/isomerase 77 324 IPR001753 -
Dere13g1175 330 CDD crotonase-like 70 266 - -
Dere13g1175 330 NCBIfam 1,4-dihydroxy-2-naphthoyl-CoA synthase 67 326 IPR010198 GO:0008935|GO:0009234
Dere13g1175 330 PANTHER NUCLEOSIDE-DIPHOSPHATE-SUGAR EPIMERASE 3 330 - -
Dere13g1175 330 Hamap 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 56 329 IPR010198 GO:0008935|GO:0009234
Dere13g1175 330 SUPERFAMILY ClpP/crotonase 66 325 IPR029045 -
Dere13g1175 330 ProSitePatterns Enoyl-CoA hydratase/isomerase signature. 168 188 IPR018376 GO:0003824
Dere13g1175 330 Gene3D - 270 318 IPR014748 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1175 Dere-ChrDere13 16257076 16260586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1175 11 330 Acyl Lipid Metabolism Gene Families AT1G60550 80.061 0.0 547
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1175 13 16257076 16260586 Dere13g1175 13 16257076 16260586 ECH