Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1173 ATGCAAAGAAGAAGCTCTCTGTTTTCCTCTCTGCCTTTCTCTCTTTCCCTCTCTCTCTTCTTCCCTACTCACATTCCCATAAAAATGAGAGGATTTGGTTTGAGAGGCTTCACATTTATGGTCCTCGTTGCATTTCTTGTGTGGTCTTCCAATTTTGAAGCCTGCATTGCAAGAAGAGGCAAGCATTGGAGGCAAAACAGAGATGTGTCAGCTTCTCTGTTCAAGAAGAAAGGAAAGAATTATGGCAGTGGTCACAGCAACAACCACCATGGTGGAGGATCATCTTCAAAACCAAAGCCTCCATCACACAAAAGCTCTCCATCATCATCATCAAAGGCTCCTCCATCACATAAAGGCACTCCATCAGTATCACCACCTCCAACTCCTAAGCCTAAAAAGGGTACCCCTTCAACTTCACCACCAAAGGCTTACAATGGTGGCCATTCTACCATCTTCAATGTCCTAGATTTTGGAGCTAAGGGAGACGGAAGAGCTGATGACACAAAGGCATTTCAAGCTGCATGGGCAGCTGCTTGTAAGGTGGAGGCATCAACCATGCTTATCCCAGCAGAGTACATCTTCTTCGTGGGACCCATTTCATTCTCGGGTCCATACTGCAAACCCAACATAGTTTTTCAGCTTGATGGAACAATTATTGCCCCAACAAACTCCAAGGTGTGGGGCAGAGGATTGCTACAGTGGCTGGATTTCACAAAGCTGGTCGGAATAACTATCCAAGGGAAGGGCATCATCGATGGAAGAGGCTCAGTCTGGTGGCAAGACCACCCATTTGATGATCCCATTGATGATGAAGAAAAGCTCATAGTCCCATTAAACAACACAGTGAAGAGGCCTCCAATCCCGGTTCAAAGTGAGCTGCGAGGGAAAATGCCAATCATCAAGCCAACTGCACTACGGTTCTACGGGAGTTTTAATCCAACGGTCACAGGCATAACAATTCAAAATAGCCCCCAGTGCCACCTCAAGTTTGACAACTGCAATGGAGTCCTGGTCCACGATGTGAGCATTTCATCTCCTGGTGACAGTCCCAATACAGATGGAATTCACATTCAGAATTCCAAAGATGTGTTGATTCACAGCAGTAAATTAGCTTGTGGTGATGACTGTGTTTCTATACAAACTGGATGCTCAAATGTATATGTACACAATGTCAACTGCGGGCCAGGACATGGAATCAGCATTGGAAGTCTAGGGAAGGATAACACAAGAGCCTGTGTCTCAAACATAACTGTCAGAGATGTCATCATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGGGTGGATCAGGCTCTGTACAGGGGGTCCTGTTCTCGAACATACAAGTTTCGGAAGTACAACTCCCAATTGTGATTGACCAATTCTATTGTGACAAAAGAACATGCAAAAACCAAACATCAGCCGTGGCTCTTGCAGGAATCAACTACGAAAGAATAAGGGGGACATACACAGTTAAGCCAGTACACTTTGCCTGTAGTGATAGCCTGCCGTGCGTAGATGTTTCATTAACCACCATTGAGCTCAAACCACTTCAAGAACAATACCACCTATATGATCCATTCTGCTGGCAGACTTTTGGTGAATTAAGAACTCCAACAGTTCCACCAATTGCTTGTCTACAGATTGGGAAGCCATCAAGCAATCGGATTCAGATTGATCATGATTTGTGTTGA 1701 0.4491 MQRRSSLFSSLPFSLSLSLFFPTHIPIKMRGFGLRGFTFMVLVAFLVWSSNFEACIARRGKHWRQNRDVSASLFKKKGKNYGSGHSNNHHGGGSSSKPKPPSHKSSPSSSSKAPPSHKGTPSVSPPPTPKPKKGTPSTSPPKAYNGGHSTIFNVLDFGAKGDGRADDTKAFQAAWAAACKVEASTMLIPAEYIFFVGPISFSGPYCKPNIVFQLDGTIIAPTNSKVWGRGLLQWLDFTKLVGITIQGKGIIDGRGSVWWQDHPFDDPIDDEEKLIVPLNNTVKRPPIPVQSELRGKMPIIKPTALRFYGSFNPTVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHIQNSKDVLIHSSKLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVIMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRTCKNQTSAVALAGINYERIRGTYTVKPVHFACSDSLPCVDVSLTTIELKPLQEQYHLYDPFCWQTFGELRTPTVPPIACLQIGKPSSNRIQIDHDLC 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1173 566 FunFam polygalacturonase At1g48100 140 551 - -
Dere13g1173 566 MobiDBLite consensus disorder prediction 119 136 - -
Dere13g1173 566 MobiDBLite consensus disorder prediction 84 118 - -
Dere13g1173 566 SUPERFAMILY Pectin lyase-like 149 559 IPR011050 -
Dere13g1173 566 SMART pbh1 333 359 IPR006626 -
Dere13g1173 566 SMART pbh1 383 403 IPR006626 -
Dere13g1173 566 SMART pbh1 413 434 IPR006626 -
Dere13g1173 566 SMART pbh1 442 463 IPR006626 -
Dere13g1173 566 SMART pbh1 360 381 IPR006626 -
Dere13g1173 566 Gene3D - 139 553 IPR012334 -
Dere13g1173 566 MobiDBLite consensus disorder prediction 76 145 - -
Dere13g1173 566 PANTHER - 150 535 - -
Dere13g1173 566 Pfam Glycosyl hydrolases family 28 182 261 IPR000743 GO:0004650|GO:0005975
Dere13g1173 566 Pfam Glycosyl hydrolases family 28 301 518 IPR000743 GO:0004650|GO:0005975
Dere13g1173 566 ProSitePatterns Polygalacturonase active site. 390 403 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1173 Dere-ChrDere13 16250782 16255248 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1173 27 566 Glycoside Hydrolase AT1G60590 66.790 0.0 716
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1173 13 16250782 16255248 Dere13g1173 13 16250782 16255248 ECH