Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1165 ATGGTGATAGTAGCATCGCTACCCGGACGTAACCTCTTCTCCTCCTTACCTTCTACACCACCACCCACCGACCCTACCGTCACCACAGCCACTCCTTCCCCTCCAATCCCAATTCCCAAATACCCACCTCCTCGCAGATCCCGCAAGTCCCAGCATCACCCTCCTGAACCCTCAAAACCCACATCCAGTCCTGCCCTGAAGTTCCACCGAAACTCCAAGTACTTCAAACCCGTCAAAGATGGCGTTATTGCATCGGAGGGCGATCGCTCCGTCGTCATCGGCGAGTCCGGCGTGTCCTATCTCCTTCCCGGAGCACCATTCGAATTCCAGTTTAGCTATTCCGAGACGCCAAAGGTGAAGCCGCTGGCGATTCGGGAGCCGGCGTTCTTGCCGTTCGCGCCGCCCACAATGCCGAGGCCATGGACTGGTAAAGCGCCATTGAAGAGCTCGAAGAAGAAGATTCCACTCTTTGACTCTTTCAATCCTCCCCCGCCGGGTACGAAAGGAATGAAGCAAGTTGAAATGCCAGGGCCGTTTCCACTTGGGAAGTATCCGAAGGAGGGGAAGACGAGGGATGAGATACTTGGGGAGCCTTTGAAGAAGTGGGAGATAAGAATGCTTGTTAAACCTATGTTGGGTGATAATCGCCAGGTTAATCTCGGAAGGGATGGATTAACACATAACATGTTGGAGTTAATACATTCGCATTGGAAGCGATCCCGTGTCTGTAAAGTTCGCTGTAAAGGTGTTCCAACCGTAGATATGGATAACGTTTGCCATCATCTTGAGGAGAAAACAGGGGGGAAAATAATTCATCGAGTTGGTGGTGTAGTTTATCTTTTCCGTGGGAGAAATTACAACTATCGTACTCGTCCACAGTATCCACTGATGCTCTGGAAGCCAGCTGCTCCAGTTTACCCAAAACTTATCCAGGAAGCTCCAGAAGGATTAACAAAAGCTGAAGCTGATGGATTCCGTAAGAAAGGGAAAAAGCTACTGCCAATATATAAATTAGCTAAAAATGGAGTCTACGTTTCCCTTGTGAAAGATGTAAGACATGCTTTTGAAGGAAGTCCTTTGGTGAAGATTGACTGCAAGGGGTTGGAACCCAGTGATTACAAGAAAATAGGAGCCAAGCTTAAGGAATTGGTTCCTTGTGTGCTGTTGTCTTTTGATGATGAACAGATATTGATGTGGAGAGGGAAAGACTGGAAATCAATGTACCCTGAAGCTCCACCAGTTTTAAGTCTTCCAGAAGTTGGCGTTGCAGGGACCTTGGACAATTCAGGTGAGACTGATGATGATCAAAGTAAGCATGATGCCAACATGATGCGCACAAGCCCTAAAATGATGTCTCTGTGGAAGCGTGCAATAGAGTCAAACAAAGCTTTGTTGCTTCATGAGATTAATGTTGATCCTGATGCTCTCTTGGAGAAGGTAGAAGAGTTTGAGTGTGTTTCGCAGGCCACTGAACACTCCTACCCGGCATATATATTATCAAGTGAAGATAGTGCTACCAAAGATTCAATTGCAGACTTTGAAGGCACCATAGATGACACATGTTCTAGTGATGGCTTTACTACTGAGGACGATGATGATAAGTATGACGAGTATGATGAATATGATGAGGATGGATCGAATTATGTGGTGGACTCTTCAGCCCCACCTGGATTATTACCTATTGATTTAATTAATGAAAAGCTCAGAATAAGACGAGACTAG 1722 0.4663 MVIVASLPGRNLFSSLPSTPPPTDPTVTTATPSPPIPIPKYPPPRRSRKSQHHPPEPSKPTSSPALKFHRNSKYFKPVKDGVIASEGDRSVVIGESGVSYLLPGAPFEFQFSYSETPKVKPLAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSFNPPPPGTKGMKQVEMPGPFPLGKYPKEGKTRDEILGEPLKKWEIRMLVKPMLGDNRQVNLGRDGLTHNMLELIHSHWKRSRVCKVRCKGVPTVDMDNVCHHLEEKTGGKIIHRVGGVVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKAEADGFRKKGKKLLPIYKLAKNGVYVSLVKDVRHAFEGSPLVKIDCKGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEAPPVLSLPEVGVAGTLDNSGETDDDQSKHDANMMRTSPKMMSLWKRAIESNKALLLHEINVDPDALLEKVEEFECVSQATEHSYPAYILSSEDSATKDSIADFEGTIDDTCSSDGFTTEDDDDKYDEYDEYDEDGSNYVVDSSAPPGLLPIDLINEKLRIRRD 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1165 573 ProSiteProfiles CRM domain profile. 315 411 IPR001890 GO:0003723
Dere13g1165 573 Gene3D - 198 294 IPR035920 -
Dere13g1165 573 Gene3D - 317 411 IPR035920 -
Dere13g1165 573 SUPERFAMILY YhbY-like 317 408 IPR035920 -
Dere13g1165 573 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 46 519 IPR044599 GO:0000373
Dere13g1165 573 SMART CRS1_YhbY_2 317 400 IPR001890 GO:0003723
Dere13g1165 573 SMART CRS1_YhbY_2 199 282 IPR001890 GO:0003723
Dere13g1165 573 MobiDBLite consensus disorder prediction 524 546 - -
Dere13g1165 573 FunFam CRS2-associated factor 1, chloroplastic 198 293 - -
Dere13g1165 573 MobiDBLite consensus disorder prediction 18 44 - -
Dere13g1165 573 MobiDBLite consensus disorder prediction 422 442 - -
Dere13g1165 573 MobiDBLite consensus disorder prediction 520 555 - -
Dere13g1165 573 Pfam CRS1 / YhbY (CRM) domain 317 400 IPR001890 GO:0003723
Dere13g1165 573 Pfam CRS1 / YhbY (CRM) domain 201 282 IPR001890 GO:0003723
Dere13g1165 573 MobiDBLite consensus disorder prediction 1 70 - -
Dere13g1165 573 FunFam CRS2-associated factor 1, chloroplastic 316 410 - -
Dere13g1165 573 ProSiteProfiles CRM domain profile. 197 293 IPR001890 GO:0003723
Dere13g1165 573 SUPERFAMILY YhbY-like 198 292 IPR035920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1165 Dere-ChrDere13 16160565 16165151 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1165 13 16160565 16165151 Dere13g1165 13 16160565 16165151 ECH