Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1053 ATGGCTTTTTGTGGGACTTTCCTCAAGTCTCTCCCTCCATGCCTCAAAGCTCAATCTCCAGACCATCGTGCTTGCAGGAAACAGTTCCGTTTAAGAGCTTCAACATGCAGTTCAGATGACGAGGAAAGGACGATTATAAGGAAAACAAAAGATGGGTGGAAGATCAATTACTCAGGCCAGAAACCAGCGACTCCATTGCTGGACACAATCAATTACCCTGTTCATATGAAAAATCTATCCACACAGGATCTTGAACAACTTGCAGCAGAACTAAGGGCAGATATTGTATATACTGTATCAAGTACTGGTGGGCATCTTAGCTCAAGTTTAGGAGTGGTGGAGTTAGCAGTGGCCTTGCACCATGTTTTCAACACCCCAGAAGACAAGATTATATGGGATGTCGGTCACCAGGCATACCCACATAAGATTCTTACAGGCCGAAGGTCCAAGATGCACACCATTAGGAAAACTGCAGGGCTAGCAGGATTCCCTAAAAGGGATGAGAGCGTTCATGATGCTTTTGGGGCAGGGCACAGTTCTACAAGCATATCTGCTGGTCTTGGCATGGCAGTTGCGAGGGATCTGTTGGGAAAGAAGAACAGTGTCATTTCGGTGATCGGTGATGGAGCAATGACTGCTGGTCAAGCTTATGAGGCCATGAACAACGCAGGATTCCTTGATGCAAACATGATAGTTATACTGAATGACAACAAGCAAGTCTCTTTACCAACTGCCACACTTGATGGCCCTGCAACTCCAGTTGGAGCCCTCAGTAGTGCTTTAAGCAAAATTCAAGCAAGCACTCAATTCCGCAAACTTAGAGAAGCTGCGAAGAGCATCACAAAGCAAATAGGAGGGCAAACACATGAAGTTGCAGCAAAAGTCGATGAGTATGCAAGAGGTATGATCAGCGCATCCGGGTCTACACTTTTTGAGGAGCTCGGCTTATACTATGTTGGCCCTGTGGATGGTCATAACATCAAAGATCTAGTCAGCATTTTTCAAAAAGTGAAAGCAATGCCAGCCCCAGGTCCAGTGTTGATTCACATTGTGACAGAGAAGGGGAAAGGATACCCCCCAGCAGAGGCAGCAGTTGATAAAATGCACGGTGTTGTCAAGTATGACCCCAAAACAGGACAACAATTTAAGCCAAAGTCCTCAGCACTATCATATACCCAATACTTTGCTGAATCTTTGATAAAGGAAGCTGAAATAGACAGTAAGATAGTAGCAATTCATGCAGCCATGGGTGGAGGGACAGGTCTAAATTATTTCCAAAAAAGGTTTCCAGAACGCTGCTTTGACGTGGGGATAGCTGAACAACATGCAGTTACCTTTGCAGCTGGCTTAGCAGCGGAAGGTCTCAAGCCATTCTGCACTATCTATTCATCATTCCTGCAACGTGGATATGATCAGGTGGTCCATGATGTAGATCTTCAGAAACTACCTGTCCGCTTTGCTATGGATAGAGCTGGTTTGGTTGGCGCTGATGGACCAACCCATTGTGGTGCCTTTGATATCACATACATGGCTTGCTTGCCCAACATGGTGGTCATGGCTCCATCTGATGAAGCTGAACTGATGCACATGGTTGCAACAGCAGCAGCCATAGATGACAGACCTAGCTGCTTTAGATTCCCAAGAGGCAATGGAATTGGAGCCGTTTTGCCCCCAAATAACAAAGGAACCCCACTTGAGATAGGAAAAGGCAGAATACTAATAGAAGGCAGCAAGGTTGCTATTTTGGGATATGGTTCTATAGTTCAACAATGTCTGGAAGCTGCAAAAATGCTCAAATCACAAGGGGTTTCTGTGACAGTTGCTGATGCTAGGTTTTGCAAACCTTTGGATACTGATCTTATTAAACAACTAGCTAAGGAGCACGAAATTCTCATCACAGCGGAAGAAGGTTCTATTGGAGGTTTTGGATCACATGTATCACAATTCCTAAGCTTAGCTGGTATCTTGGATGGACATCTAAAGTGGAGATCAATGATGCTTCCTGATAGATACATTGATCATGGGTCACCCCAAGATCAGATTGAAGAAGCTGGACTGTCATCAAAGCAAATTGCTGGAACAGTCTTGTCTCTTCTCGAGAGACCAAAAGAAGCTCTTCTGTTCAAGTAA 2130 0.4488 MAFCGTFLKSLPPCLKAQSPDHRACRKQFRLRASTCSSDDEERTIIRKTKDGWKINYSGQKPATPLLDTINYPVHMKNLSTQDLEQLAAELRADIVYTVSSTGGHLSSSLGVVELAVALHHVFNTPEDKIIWDVGHQAYPHKILTGRRSKMHTIRKTAGLAGFPKRDESVHDAFGAGHSSTSISAGLGMAVARDLLGKKNSVISVIGDGAMTAGQAYEAMNNAGFLDANMIVILNDNKQVSLPTATLDGPATPVGALSSALSKIQASTQFRKLREAAKSITKQIGGQTHEVAAKVDEYARGMISASGSTLFEELGLYYVGPVDGHNIKDLVSIFQKVKAMPAPGPVLIHIVTEKGKGYPPAEAAVDKMHGVVKYDPKTGQQFKPKSSALSYTQYFAESLIKEAEIDSKIVAIHAAMGGGTGLNYFQKRFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCTIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILIEGSKVAILGYGSIVQQCLEAAKMLKSQGVSVTVADARFCKPLDTDLIKQLAKEHEILITAEEGSIGGFGSHVSQFLSLAGILDGHLKWRSMMLPDRYIDHGSPQDQIEEAGLSSKQIAGTVLSLLERPKEALLFK 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1053 709 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 388 556 - -
Dere13g1053 709 SMART Transket_pyr_3 389 554 IPR005475 -
Dere13g1053 709 Gene3D - 60 361 - -
Dere13g1053 709 Gene3D - 389 555 - -
Dere13g1053 709 ProSitePatterns Transketolase signature 2. 495 511 IPR020826 -
Dere13g1053 709 CDD TPP_DXS 103 358 IPR005477 GO:0008661|GO:0016114
Dere13g1053 709 Pfam Transketolase, pyrimidine binding domain 389 550 IPR005475 -
Dere13g1053 709 Gene3D - 568 700 IPR009014 GO:0003824
Dere13g1053 709 SUPERFAMILY TK C-terminal domain-like 563 699 IPR009014 GO:0003824
Dere13g1053 709 Pfam Transketolase, C-terminal domain 568 691 IPR033248 -
Dere13g1053 709 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 386 577 IPR029061 -
Dere13g1053 709 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 67 352 IPR005477 GO:0008661|GO:0016114
Dere13g1053 709 CDD TPP_PYR_DXS_TK_like 395 548 - -
Dere13g1053 709 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 66 700 IPR005477 GO:0008661|GO:0016114
Dere13g1053 709 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 568 700 - -
Dere13g1053 709 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 69 699 IPR005477 GO:0008661|GO:0016114
Dere13g1053 709 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 64 451 IPR029061 -
Dere13g1053 709 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 21 706 IPR005477 GO:0008661|GO:0016114
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1053 Dere-ChrDere13 13897125 13902494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1053 369 647 Acyl Lipid Metabolism Gene Families AT1G55510 23.649 4.76e-09 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1053 13 13897125 13902494 Dere13g1053 13 13897125 13902494 ECH