Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0891 ATGCATTCTTCAATGGATTTGAGAAGGCTTTCAAGCACTATAACTTGTCCTTTCTTATCACCCATCGCGCGGCCCTTGACCTGGGTGACAACAGCCGCCCAACGCCACCTTCAAGACCAAAGCCCTCCTCAACCGCCGCCTTTACAGCCCCAGAATCAATCGGTACCTTCTTCTAATCAGGGTGTGCTTAATTTGGTGGCTTCTATTCTCTCTAGTAGGGTTCTAGATTCTTCTAAATGCAAAGCACTGATACCCCACTTGTCCCCTCTTGAATTTGATCAATTATTTTTTACTATTAAATCCAATGTGAACCTCGAAACAACTCTTCACTTCTTTCGTTTGGCTGCTGATTCTTTAAAGTTTCGATTCACGGTTCGGTCGTACTGCCTTTTGGTTCGTTTGCTTCTAACTTCAAATTTTTTGTCGCCCGCAAGGTTGCTTTTGATCCGCTTGATTGATGGAAACTTGCCCGCTTTATTTGGTAACCATGACAATAGGCACATCGAAATAGCTGTTTCAATGTGGGAGCTGAATACCGTTAAAGAAGATAAACATGATGAATTGGATTTGTTGATTCATATTTTCTGTTCCGAATTCAAGAATTTGGGTCTTCCGTCTGCTGTTGATATTTTTTATATATTCGCCAGCAAGGGTACATTTCCTTCTCAGAAAACTTGCAATTTTTTGTTGACCTCTTTATTGAAGGCTGGTGAAATTCAGAAGTGTTATGAGGTGTTTGAAGCTTTTTGTCAAGGTGTTTTACCAGATGTTTACACATGTACTACTGCAATCAATGCATTTTTCAAGGGTGGCAGGGCTGAGGATGCAATTAATTTGTTCTTGAAAATGGAGGAGATTGGTATTTCACCTAATGTCGTTACCTACAATAACATAATTGATGGGCTCTGCAAGAGCGGAAGATTAGAAGCAGCATTTCAATTTAAAGAGAGGATGGTAAAAAGCAAAGTGAATCCAAGTCTTATAACATATAGTATGCTTATCAATGCTCTGGTGAAGGTGGACAAATTTGATGAAGCAAATAGTATTTTGGTGGAAATGTCCAACAGTGGGTTTGCTGCCAATGAGTTTGTTTATAACACGCTGATTGATGCATTCTGCAAGAAGGGAAATATGAGTGAGGCACTAAGGATCAACGATGACATGCTATCTAAGGGCATAAAACCGAATTCTGTTACTCTTAATACTCTTTTACAAGGATTTTTCAGGAGTAATCAAATGGAGCAAGCTGAGAAAATATTAGAGGAGATATTATCTGGTAGGTTATCTTTTAACCAGGATGTATATTTTTTTGTTATTCACTGGTTATGTAAGAAATCAAGGTTTGATTCTGCCCTGCGATTTGTCAGAGAGTTGTTGCTAAGGAAAGTAAAGCCTAGCGACAGCTTGCTTACCCCATTAGTCCGTGGACTTTGTAAGTGTAAGAAACATTCAGAGGCTATTGAACTTTGGTTTAGCCTTGCAGATAATGGCTTTGCAGCCAATACAGTTATCTCAAACACTCTTCTCCATGGACTTTGTGAACGAGGTAACATGCAGGAGGTTGTCACAGTACTCAAAAAGATGCTTGAGAGGGGTTTGATATTGAATAGGATCTCATACAACACGCTCATTTTTGGCTGTTGCAAAGGGGGTATAGTTAAAGAAAGTTTTATCCTTAAGGAAGAGATGGCTAAGCGAGGAATCCAACCAGATATACGAACCTACAATTGCCTAATGAAGAGATTGGTTGATATGGGTAAAATGGATGATGCTAATAATCTTTTGCATGAAGGCCAACAAAATGGCTTGGTTCCAAATGTCTATACATATGCACTGATGATCAGAGGATATTGTAAGTCTGACAGAATTGAAGATGCCGTAAACTTACTCAATGAGTTAGTTAATAGGAAAGTAGAATTAAGTTCAGTTGCTTTTAACATACTTATAGCAGCCTATTGCCGAATTGGGAATGTAATAGAAGCCTTCAAACTTCGTGATGCCATGAAAAGTAGGGGAATTCCACCAACGTGTGCCACATATTCTTCTCTAATACATGGAATGTGTAAACTTGGTTGTGTTGATGAAGCAAAAGATATTTTTGAAGAAATGAGAAAAGAAGGCTTGTTGCCAGACGTTGTATGCTATACTGCACTAATTGGGGGTTACTGCAAGCTAGGTCAGATGGATAGAGTGGGGAGTGTCTTGCTGGAAATGTCTTCAAACAATATACAACCTAATGAAATTACCTACACTATTATGATTGATGGGTATTGCAAATTGGGCAACATGAAAGAAGCAAATAAGATTTTAGGTGAGATGATGGGAAAAGGAATAACACCAGATACTGTCTCTTATAATGCGTTGGTAAATGGGCATTGCAATGAAAGAAAACTACAAGAAGCTTTTCAATTGTGTGATCACATGTCTGGCGGAGGTGTACCATTAGACGAAATTACATACACCACACTGGTTCATGGGTTGCATCCTCCTACAATGCTTAGCAATCAAGAGTAA 2514 0.3902 MHSSMDLRRLSSTITCPFLSPIARPLTWVTTAAQRHLQDQSPPQPPPLQPQNQSVPSSNQGVLNLVASILSSRVLDSSKCKALIPHLSPLEFDQLFFTIKSNVNLETTLHFFRLAADSLKFRFTVRSYCLLVRLLLTSNFLSPARLLLIRLIDGNLPALFGNHDNRHIEIAVSMWELNTVKEDKHDELDLLIHIFCSEFKNLGLPSAVDIFYIFASKGTFPSQKTCNFLLTSLLKAGEIQKCYEVFEAFCQGVLPDVYTCTTAINAFFKGGRAEDAINLFLKMEEIGISPNVVTYNNIIDGLCKSGRLEAAFQFKERMVKSKVNPSLITYSMLINALVKVDKFDEANSILVEMSNSGFAANEFVYNTLIDAFCKKGNMSEALRINDDMLSKGIKPNSVTLNTLLQGFFRSNQMEQAEKILEEILSGRLSFNQDVYFFVIHWLCKKSRFDSALRFVRELLLRKVKPSDSLLTPLVRGLCKCKKHSEAIELWFSLADNGFAANTVISNTLLHGLCERGNMQEVVTVLKKMLERGLILNRISYNTLIFGCCKGGIVKESFILKEEMAKRGIQPDIRTYNCLMKRLVDMGKMDDANNLLHEGQQNGLVPNVYTYALMIRGYCKSDRIEDAVNLLNELVNRKVELSSVAFNILIAAYCRIGNVIEAFKLRDAMKSRGIPPTCATYSSLIHGMCKLGCVDEAKDIFEEMRKEGLLPDVVCYTALIGGYCKLGQMDRVGSVLLEMSSNNIQPNEITYTIMIDGYCKLGNMKEANKILGEMMGKGITPDTVSYNALVNGHCNERKLQEAFQLCDHMSGGGVPLDEITYTTLVHGLHPPTMLSNQE 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0891 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 641 675 IPR002885 -
Dere13g0891 837 Pfam PPR repeat 473 498 IPR002885 -
Dere13g0891 837 Pfam PPR repeat 258 288 IPR002885 -
Dere13g0891 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 746 780 IPR002885 -
Dere13g0891 837 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 463 739 - -
Dere13g0891 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Dere13g0891 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Dere13g0891 837 Gene3D Tetratricopeptide repeat domain 478 589 IPR011990 GO:0005515
Dere13g0891 837 Gene3D Tetratricopeptide repeat domain 200 340 IPR011990 GO:0005515
Dere13g0891 837 Pfam PPR repeat family 780 827 IPR002885 -
Dere13g0891 837 Pfam PPR repeat family 361 407 IPR002885 -
Dere13g0891 837 Pfam PPR repeat family 710 759 IPR002885 -
Dere13g0891 837 Pfam PPR repeat family 290 339 IPR002885 -
Dere13g0891 837 Pfam PPR repeat family 641 689 IPR002885 -
Dere13g0891 837 Pfam PPR repeat family 501 549 IPR002885 -
Dere13g0891 837 Pfam PPR repeat family 570 619 IPR002885 -
Dere13g0891 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 676 710 IPR002885 -
Dere13g0891 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Dere13g0891 837 MobiDBLite consensus disorder prediction 35 57 - -
Dere13g0891 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Dere13g0891 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Dere13g0891 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 606 640 IPR002885 -
Dere13g0891 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 781 815 IPR002885 -
Dere13g0891 837 SUPERFAMILY TPR-like 265 425 IPR011990 GO:0005515
Dere13g0891 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Dere13g0891 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 711 745 IPR002885 -
Dere13g0891 837 NCBIfam pentatricopeptide repeat 506 536 IPR002885 -
Dere13g0891 837 NCBIfam pentatricopeptide repeat 574 607 IPR002885 -
Dere13g0891 837 NCBIfam pentatricopeptide repeat 643 677 IPR002885 -
Dere13g0891 837 NCBIfam pentatricopeptide repeat 748 782 IPR002885 -
Dere13g0891 837 NCBIfam pentatricopeptide repeat 364 397 IPR002885 -
Dere13g0891 837 NCBIfam pentatricopeptide repeat 679 712 IPR002885 -
Dere13g0891 837 NCBIfam pentatricopeptide repeat 293 326 IPR002885 -
Dere13g0891 837 NCBIfam pentatricopeptide repeat 608 641 IPR002885 -
Dere13g0891 837 NCBIfam pentatricopeptide repeat 713 747 IPR002885 -
Dere13g0891 837 NCBIfam pentatricopeptide repeat 328 361 IPR002885 -
Dere13g0891 837 NCBIfam pentatricopeptide repeat 258 292 IPR002885 -
Dere13g0891 837 NCBIfam pentatricopeptide repeat 538 572 IPR002885 -
Dere13g0891 837 NCBIfam pentatricopeptide repeat 783 816 IPR002885 -
Dere13g0891 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
Dere13g0891 837 Gene3D Tetratricopeptide repeat domain 590 737 IPR011990 GO:0005515
Dere13g0891 837 Gene3D Tetratricopeptide repeat domain 341 475 IPR011990 GO:0005515
Dere13g0891 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Dere13g0891 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Dere13g0891 837 Gene3D Tetratricopeptide repeat domain 738 828 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0891 Dere-ChrDere13 11311120 11313633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0891 467 837 Glycosyltransferase AT1G05670 30.728 8.06e-58 209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g0891 13 11311120 11313633 Dere13g0891 13 11311120 11313633 ECH