Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0683 ATGAGATTTCGTGGCAATTCCAAAGAATCTTATGTGATCACTTTAAGTCCTTTTCCTCCTCATTTTCATGTGGAATTAGTGGAATCGACATTGGATATGCCGAAAGCTAGACAGCGTGGGCCATTGGGTCGAGGATTCCACTCACTCGCTTACACAAAACGTCTCTCCATCTATAGATACGAATTCAAAGTTCAGAGCACCACAGAATTCTTGCTCTGTCTTCAAATTACCTTCAGCACCATGATATTTTCCACCGGAGACATGCCTTCGCCTTCCTCCATGTTCTCTGCTTATGCCTCCATGACTGCCTCTATTATGCTTCTTCGTTCAATGGCTAACGATCTCGTACCTCAGCCAATTCGAGGTTATCTTTTCAATGCCATTCGTTACTTCATCAAGCCGCGCTCTCCTTCTCTCACCCTGGTCATCGAAGAATCGAGTGGCATAGCTCATAACCAAGTCTATAATGCTGCCGAGGTATATTTATCAACCAGAGTCAGTCCCGATAACGAGAGGCTCAGGATCAGTAAGAGTCCGAAGGAGAAGAAATTGACCATTCGGCTGGAAAAGGGTGAGAAGCTAGTGGATTTCTATGATGGGGTTGAGCTCAAATGGAGATTTATCTGTGCAGAATCCGAGAAGAACAATCCCAATAACAACGGCAATGTCCCTGTGAATTCGGAAAAGCGATATTTTGAGCTGAGTTTCCACACGAAGCACAAGGAAATGGTGTTTGGCTCTTATCTGCCGTTCGTTCTGGAAAGAGCCAAGTCGATGAAAGACGAGGAAAGGGTGTTGAAAATGCATACTCTAAACACGTCCTATTGTTATAGTGCTGCGAAATGGGATTCTATCAATTTGGAACACCCATCAACGTTTGAGACTCTGGCTTTGGAGCCAGAGGTGAAGAAGGCAGTGATGGAGGATTTGAATAGGTTCTTGAGGAGGAAGGAGTTCTATAAGAAAGTTGGGAGGGCTTGGAAACGTGGCTACTTGTTGTATGGCCCTCCTGGTACTGGAAAATCAAGCTTGATCGCAGCCATGGCTAATTACTTGAAGTTTGATATCTATGACCTCCAACTTGCAGAAATAGTCAGAGATTCGGATTTGAGAAAGCTGCTCCTTGCAACTGCAAATAGGTCTATTTTAGTCATTGAAGACATTGATTGTAGCGTTGATCTTCCCGATCGTCGGCATGGAGATGGACGAAAGCAAGCTGATGTACAGTTGACGTTGTCTGGATTACTGAACTTCATAGACGGACTGTGGTCTAGCTGTGGAGATGAGAGAATCATCGTATTCACCACCAACCACAAGGAAAGGCTAGACCCAGCTCTGTTGCGACCAGGAAGAATGGACATGCACATTCACATGTCCTATTGTTCGTACCACGGATTCAAGATTTTGGCCTCAAACTACTTGGGGATTTCCTCCGATCATCATCTGTTTGGAGAGATAGAAGGGCTTATAGAGGAGACACAGATAAGCCCTGCTCAAGTGGCAGAGGAGTTTATGAAGAGCGAAGACGCTGACGCTGCACTTGAAGGATTCGTGAATATGCTTAAGCGCAAAAAGATGGAGGGCGATGTATGCTCTAATGGTTCCGAGAAAGCAGAAAATCGTCAATCAAAAAGACGAAAAGTGGACTCTAGACCCAAAAAGTCTGTGGGGATCGTCAAGAAAAATGGTGTCCGACGAAGAACAAGAAGGTAG 1713 0.4489 MRFRGNSKESYVITLSPFPPHFHVELVESTLDMPKARQRGPLGRGFHSLAYTKRLSIYRYEFKVQSTTEFLLCLQITFSTMIFSTGDMPSPSSMFSAYASMTASIMLLRSMANDLVPQPIRGYLFNAIRYFIKPRSPSLTLVIEESSGIAHNQVYNAAEVYLSTRVSPDNERLRISKSPKEKKLTIRLEKGEKLVDFYDGVELKWRFICAESEKNNPNNNGNVPVNSEKRYFELSFHTKHKEMVFGSYLPFVLERAKSMKDEERVLKMHTLNTSYCYSAAKWDSINLEHPSTFETLALEPEVKKAVMEDLNRFLRRKEFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLQLAEIVRDSDLRKLLLATANRSILVIEDIDCSVDLPDRRHGDGRKQADVQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCSYHGFKILASNYLGISSDHHLFGEIEGLIEETQISPAQVAEEFMKSEDADAALEGFVNMLKRKKMEGDVCSNGSEKAENRQSKRRKVDSRPKKSVGIVKKNGVRRRTRR 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0683 570 ProSitePatterns AAA-protein family signature. 430 448 IPR003960 GO:0005524|GO:0016887
Dere13g0683 570 SMART AAA_5 327 462 IPR003593 GO:0016887
Dere13g0683 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 508 IPR027417 -
Dere13g0683 570 Gene3D - 280 456 IPR027417 -
Dere13g0683 570 PANTHER BCS1 AAA-TYPE ATPASE 96 526 - -
Dere13g0683 570 MobiDBLite consensus disorder prediction 528 570 - -
Dere13g0683 570 CDD RecA-like_BCS1 306 458 - -
Dere13g0683 570 MobiDBLite consensus disorder prediction 528 556 - -
Dere13g0683 570 Pfam ATPase family associated with various cellular activities (AAA) 332 459 IPR003959 GO:0005524|GO:0016887
Dere13g0683 570 Gene3D - 457 528 - -
Dere13g0683 570 Pfam Domain associated at C-terminal with AAA 116 208 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0683 Dere-ChrDere13 8628583 8632608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0683 320 515 Miscellaneous Gene Families AT3G02450 29.412 2.44e-12 67.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g0683 13 8628583 8632608 Dere13g0683 13 8628583 8632608 ECH