Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0662 ATGGCCTCCTTAAACTCTGCGATATATAGTACTCCCCACCTCCAGACTAGTGTGATGGAACTAATCGGAGCGTTCAGATCCTCGACACCAACTCCAACTGTGGACCGTGGAGCTCCGGCTATGGAGCTAGTAGCTTGGCACATATGTGCAACTCTTCCCATAGAAAAATTTCCGGCTCTTACTGTGTTCCATCACACTTTGTTTCCTGGGTTTATGATCAGAAATCCATTACACCAAATCCCATTTGAAATTTCGTCCCAATTCATTAGTTGTATAAATAGGAATTGTCGATTTGAAGTATGTGCACGTAAAAGAGAATGGGTTAGCGAACAGGAGTTTAGCAGAGAAATCGAAGGAGTAGAGGAACCTCATACGAGCTCTTCTTTGGAGGATGACTTGTCTTTCTTGTCTCTTAGCGAGAAGCCGGACAGGAATATGGCTCTGCTGGACGATTATGAAGCGGAGGAGCTTGATTATGATTCCCACCCTGACCACCGAAGCGGATATGTGGCTTTACTTGGCAAGCCAAATGTTGGGAAGAGTACACTAGCAAACCAAATGATTGGCCAAAAGTTGTCCATAGTTACACAGAAACCTCAAACAACAAGGCACCGTATTCTTGGTATATGTTCTGGCTCAGATTATCAGATAATTCTTTATGATACACCTGGTGTTCTCAAGAAGGAAATGCACATGTTAGACTCAATGATGATGAAGAATGTTCGAAGCGCTGCAGTTAATGCTGACTGTGTATTAGTTCTTGTTGATGCATGTAAAATGCCTGAAAACATTGATGAAGTGTTGAAGGAAGGTGTAGGAGACCTCCATGACAAGCCACCCGCTCTACTGATTCTGAATAAGAAGGATCTTATCAAACCTGGGGAAATTGCAAAGAAACTTGAGTGGTATCAGAAATTTACTGATGTTGATGAGGTTATACCAGTTAGTGCCAAATATGGTCATGGGGTTGAGGATGTCAAGGACTGGATACTGTCCAAGCTTCCGAATGGACCAGCTTACTATCCGAAGGACATTGTCAGTGAGCACCCAGAAAGATTTTTTGTGGGTGAAATTGTTAGAGAAAAGATTTTTATGCAGTACCGAAATGAAATTCCCTATGCATGTCAGGTGAATGTTGTAAGCTACAAGGCTCGGCCCACTGCAAAAGATTTCATACAAGTGGAGATTGTTGTTGAGAAAAATTCACAGAAGATTATACTGATTGGAAGAGAAGGAAAGGCTTTGAAACTTCTTGCAACAGCTGCTCGTCTTGACATTGAAGATTTTCTACAGAAGAAAGTTTATCTTGAGATTGAAGTGAAAGTGAAAGAAAACTGGCGGCAAGACGAAGGGCTTCTTAAGAACTATGGGTATGGGGGCCAGATACGAGCTCTGTAA 1398 0.4227 MASLNSAIYSTPHLQTSVMELIGAFRSSTPTPTVDRGAPAMELVAWHICATLPIEKFPALTVFHHTLFPGFMIRNPLHQIPFEISSQFISCINRNCRFEVCARKREWVSEQEFSREIEGVEEPHTSSSLEDDLSFLSLSEKPDRNMALLDDYEAEELDYDSHPDHRSGYVALLGKPNVGKSTLANQMIGQKLSIVTQKPQTTRHRILGICSGSDYQIILYDTPGVLKKEMHMLDSMMMKNVRSAAVNADCVLVLVDACKMPENIDEVLKEGVGDLHDKPPALLILNKKDLIKPGEIAKKLEWYQKFTDVDEVIPVSAKYGHGVEDVKDWILSKLPNGPAYYPKDIVSEHPERFFVGEIVREKIFMQYRNEIPYACQVNVVSYKARPTAKDFIQVEIVVEKNSQKIILIGREGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKNYGYGGQIRAL 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0662 465 Gene3D - 162 345 IPR027417 -
Dere13g0662 465 PANTHER GTPASE ERA 111 450 IPR005662 GO:0003723|GO:0005525
Dere13g0662 465 Pfam KH domain 370 447 IPR004044 GO:0003723
Dere13g0662 465 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 166 336 IPR030388 GO:0005525
Dere13g0662 465 NCBIfam GTPase Era 168 441 IPR005662 GO:0003723|GO:0005525
Dere13g0662 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 368 IPR027417 -
Dere13g0662 465 Gene3D - 347 462 IPR015946 -
Dere13g0662 465 FunFam GTPase Era 347 461 - -
Dere13g0662 465 NCBIfam small GTP-binding protein domain 170 329 IPR005225 GO:0005525
Dere13g0662 465 Pfam 50S ribosome-binding GTPase 170 287 IPR006073 GO:0005525
Dere13g0662 465 CDD Era 165 334 IPR030388 GO:0005525
Dere13g0662 465 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 343 458 IPR009019 GO:0003723
Dere13g0662 465 Hamap GTPase Era [era]. 165 458 IPR005662 GO:0003723|GO:0005525
Dere13g0662 465 ProSiteProfiles Type-2 KH domain profile. 367 444 IPR004044 GO:0003723
Dere13g0662 465 FunFam GTPase Era 163 346 - -
Dere13g0662 465 CDD KH-II_Era 357 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0662 Dere-ChrDere13 8194605 8199674 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g0662 13 8194605 8199674 Dere13g0662 13 8194605 8199674 ECH