Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0612 ATGAGTTCCGTGAATCTTGGTACATGGGCTCTCCCAAGTTCTATGTTCAACCAAGTGAGCAGATCCAGATCCCCAACTTTTACCCTCTTCAATGGTCTCAGAAAAGTACCCATTTCCTTCATTACTCCTAAACCACATACCCATCCAATCTCTTCCTCTTCTTTCTCGTCTCTTTCCGTCGCTGCACTGCTCACCAAGGAAAACGCCGTCAAAGAGACGAACGAAGAAGAAAACCCCACCTTTAATTTCAAGGCCTACATGCTTCAGAAGGCTAATACAGTGAACCAAGCCTTGGATGCAGCCGTCTCTCTGCGAGAACCCGAGAAGATCCACGAGGCCATGCGATACTCGCTTCTCGCCGGAGGCAAGCGCGTGCGTCCTATGCTCTGTATTGCCGCCTGCGAACTCGTCGGCGGCCACGAATCAATGGCCATGCCATCCGCTTGCGCGGTCGAGATGATTCATACCATGTCGCTGATTCACGACGATTTGCCATGTATGGATAACGACGACCTCCGCCGAGGAAAACCGACAAATCACAAGGTTTTCGGCGAGGATGTCGCGGTTTTAGCCGGTGATGCTCTTCTGTCTTTCGCATTCGAGCACGTAGCTGTTTCCACCGTGGGCGTGCCGCCGGCGAGGCTAGTTCGCGCGGTCGGGGAGTTGGCGAAGTCGATTGGCACCGAAGGGCTCGTTGCCGGGCAAGTTGTGGATATAGCTTCGGAAGGATTGTCCGATGTGGGGTTGGAGAAACTGGAATTCATTCATCTTCACAAAACGGCGGCGTTGCTGGAAGCTTCGGTTGTGTTGGGAGCAATCGTCGGAGGTGGGTCGGATGAGGAGGTTGAGAAATTGAGGAAGTTCGCGAGGTACATCGGATTGCTGTTTCAGGTTGTGGATGACATTCTCGATGTTACCAAATCGTCCCAGGAATTAGGGAAAACAGCTGGGAAAGACTTGGTGGCGGATAAGGTCACGTATCCGAAACTTTTGGGGATAGAGAAATCGAGGGAATTTGCTGAGAAATTGAACAAGGATGCGCAAGACCAGCTCTCTGGATTTGATCCGCAAAAAGCTGCCCCATTAATTGCTTTAGCCAATTACATTGCTTACAGGCAGAACTAG 1125 0.5129 MSSVNLGTWALPSSMFNQVSRSRSPTFTLFNGLRKVPISFITPKPHTHPISSSSFSSLSVAALLTKENAVKETNEEENPTFNFKAYMLQKANTVNQALDAAVSLREPEKIHEAMRYSLLAGGKRVRPMLCIAACELVGGHESMAMPSACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHVAVSTVGVPPARLVRAVGELAKSIGTEGLVAGQVVDIASEGLSDVGLEKLEFIHLHKTAALLEASVVLGAIVGGGSDEEVEKLRKFARYIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKDAQDQLSGFDPQKAAPLIALANYIAYRQN 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0612 374 SUPERFAMILY Terpenoid synthases 84 355 IPR008949 -
Dere13g0612 374 ProSitePatterns Polyprenyl synthases signature 1. 159 175 IPR033749 -
Dere13g0612 374 Pfam Polyprenyl synthetase 108 344 IPR000092 GO:0008299
Dere13g0612 374 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 51 374 - -
Dere13g0612 374 SFLD Isoprenoid Synthase Type I 85 372 - -
Dere13g0612 374 SFLD Polyprenyl Transferase Like 85 372 - -
Dere13g0612 374 FunFam Geranylgeranyl diphosphate synthase 80 374 - -
Dere13g0612 374 ProSitePatterns Polyprenyl synthases signature 2. 292 304 IPR033749 -
Dere13g0612 374 CDD Trans_IPPS_HT 106 372 IPR000092 GO:0008299
Dere13g0612 374 Gene3D Farnesyl Diphosphate Synthase 80 374 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0612 Dere-ChrDere13 7637295 7638419 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0845 09 11298078 11299202 Dere13g0612 13 7637295 7638419 CCT
Dere13g0612 13 7637295 7638419 Dere13g0612 13 7637295 7638419 ECH
Dere13g0612 13 7637295 7638419 Dere09g0845 09 11298078 11299202 ECH