Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0335 ATGGCCATGACACCTATGAAACACCCTCCATCATCGGCCTTTCAGGAAACTGTGGAAGAGATTACTAGAATTTACAGATCGCTTCCACCTAGACCTTCGATCGAACAAGTTGAAGCTGCCACTTCTGCAGTGCAAACTGTGAACGCCGAGGAGAATATGAAGCTTGAAGAAATCTCAATGCAACAAGTCCCCCATGGTGTCCCCGATGAGCTATTCTCTGTTCTGCAAGAATTGAAGAAGACCGCGGTCTTGCTCCAGAGCCATGAACAGAGCAGAGAAGCTATCCACCTTCTTCAGCTCGAAAAGATGTTTCAGACCTTCGGTGATCTTATCCAGAGGGCTTCTGAATTGGTTTCTGGGGACGCTCAGAAACCGAAACTGCCCAATTTAGACGAAGCAGCGGGAAATATCGCCAGCGATGTTGGTATCGGTGATGTCAGTCTGGTGAAGATCAGGGAAGATGAAGAAAAACAGGACAAAATCAATCTCAACGTTGAAAAGGGATCCTCCGCAGGGGCGTCTTTTTCCGTTGTGGATGGAAACTCCGAGAAATTAAGTCTCATGAAAGTGGCCACGGTCATTGAGAATTGTGCTAACAGTAGAGCAGCAATCCTTGAACTCAGAGGGAAGCTCGTGGATCGGATGGAATGGTTGCCTGTATCAATTGGGAAACTATCTCATGTCAGGGAGATAGACCTATCTGACAACAGAATCATGGCTCTTCCTTCCACCATTGGGGGTCTCAAGGCCTTAACAAAGCTCGATCTTCACTCAAACCAGCTTATAAACCTTCCACAGTGTTTTGGGGAATTGATAAACCTCACTGATCTTGACCTCCATGCCAACAGATTAAGATCACTGCCTGCTTCTTTCGGAAACTTGAAAAACCTCATTGATCTTGACCTGAGTTCAAATGAGTTCACACAATTACCGGATATGATTGGGAATTTAAGCAGCTTGAGGAGATTAATTGTTGAGACAAACAAGCTTGAGGAGCTGCCTTATAGAATAGGAAATTGCTCCTCACTCTCAGAGCTGAGATTAGATTTTAATCAGCTCAAAGCCCTTCCTGAGGCAATTGGGAAGCTTGAATGCCTAGAGATATTAACTCTGCACTACAACAGACTCAAGGGGCTACCCACAACAATGGGTAACCTGTGTAGTTTGAAGGAACTTGATGTCAGCTTTAACGAACTGGAATTTATACCAGAGAACCTTTGCTTTGCTGTGAGTCTGAAGAAATTAAATTTGGGAAATAACTTTGCGGACCTAAGAACCTTGCCAAGATCAATTGGGGACCTTGAAATGCTAGAGGAGTTGGATATAAGTGATGATCAAATAAGAGCATTGCCAGAGTCTTTCAGGTTCTTGTCCAAATTGAGAGAGTTTCGTGCTGATGAGACTCCTCTAGAGGTGCCACCCAGAGAAGTGGTCAAGTTGGGTGCTCAGGTAGTTGTGCAGTACATGGCCGATTTTGTCGCCAAGAGGGATGCAAAATTTCTGCAATCAAAGAAAAAGAAGAAGAGGGGGTTTTGGTTCTGGTTTTGCTCAATATTCTGCCCCCGGCAGAGATGA 1575 0.4489 MAMTPMKHPPSSAFQETVEEITRIYRSLPPRPSIEQVEAATSAVQTVNAEENMKLEEISMQQVPHGVPDELFSVLQELKKTAVLLQSHEQSREAIHLLQLEKMFQTFGDLIQRASELVSGDAQKPKLPNLDEAAGNIASDVGIGDVSLVKIREDEEKQDKINLNVEKGSSAGASFSVVDGNSEKLSLMKVATVIENCANSRAAILELRGKLVDRMEWLPVSIGKLSHVREIDLSDNRIMALPSTIGGLKALTKLDLHSNQLINLPQCFGELINLTDLDLHANRLRSLPASFGNLKNLIDLDLSSNEFTQLPDMIGNLSSLRRLIVETNKLEELPYRIGNCSSLSELRLDFNQLKALPEAIGKLECLEILTLHYNRLKGLPTTMGNLCSLKELDVSFNELEFIPENLCFAVSLKKLNLGNNFADLRTLPRSIGDLEMLEELDISDDQIRALPESFRFLSKLREFRADETPLEVPPREVVKLGAQVVVQYMADFVAKRDAKFLQSKKKKKRGFWFWFCSIFCPRQR 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0335 524 SUPERFAMILY L domain-like 196 467 - -
Dere13g0335 524 Gene3D Ribonuclease Inhibitor 172 490 IPR032675 -
Dere13g0335 524 SMART LRR_typ_2 225 247 IPR003591 -
Dere13g0335 524 SMART LRR_typ_2 341 362 IPR003591 -
Dere13g0335 524 SMART LRR_typ_2 294 316 IPR003591 -
Dere13g0335 524 SMART LRR_typ_2 248 270 IPR003591 -
Dere13g0335 524 SMART LRR_typ_2 434 456 IPR003591 -
Dere13g0335 524 SMART LRR_typ_2 317 340 IPR003591 -
Dere13g0335 524 SMART LRR_typ_2 386 409 IPR003591 -
Dere13g0335 524 SMART LRR_typ_2 363 385 IPR003591 -
Dere13g0335 524 SMART LRR_typ_2 271 293 IPR003591 -
Dere13g0335 524 FunFam Plant intracellular Ras-group-related LRR protein 4 184 492 - -
Dere13g0335 524 Pfam Leucine rich repeat 273 330 IPR001611 GO:0005515
Dere13g0335 524 Pfam Leucine rich repeat 342 399 IPR001611 GO:0005515
Dere13g0335 524 ProSiteProfiles Leucine-rich repeat profile. 273 295 IPR001611 GO:0005515
Dere13g0335 524 ProSiteProfiles Leucine-rich repeat profile. 296 317 IPR001611 GO:0005515
Dere13g0335 524 PANTHER - 215 421 - -
Dere13g0335 524 SMART LRR_bac_2 340 359 - -
Dere13g0335 524 SMART LRR_bac_2 271 290 - -
Dere13g0335 524 SMART LRR_bac_2 317 336 - -
Dere13g0335 524 SMART LRR_bac_2 294 313 - -
Dere13g0335 524 SMART LRR_bac_2 363 382 - -
Dere13g0335 524 SMART LRR_bac_2 225 244 - -
Dere13g0335 524 SMART LRR_bac_2 248 267 - -
Dere13g0335 524 SMART LRR_bac_2 386 405 - -
Dere13g0335 524 SMART LRR_bac_2 409 430 - -
Dere13g0335 524 SMART LRR_bac_2 434 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0335 Dere-ChrDere13 4558520 4560945 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0335 221 449 Receptor kinase-like Gene Family AT3G11080 36.709 1.86e-27 115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g0335 13 4558520 4560945 Dere13g0335 13 4558520 4560945 ECH