Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1603 ATGCCTCTCAGGCTCGAAATTAAGCGAAAGCTTGCGCAAAGATCAGAAAGAGTAAAGTCCGTGGATCTACATCCAACAGAACCATGGATTCTGGCAAGTTTGTACTCTGGAACTGTCTGTATTTGGAACTACCAATCTCAGACCATGGCCAAATCTTTTGAAGTTACCGAGCTACCAGTTAGGTCAGCCAAATTTGTTGCACGCAAACAGTGGGTGGTTGCTGGAGCAGATGATATGTTCATTCGAGTATATAATTACAACACAATGGATAAAGTTAAAGTTTTTGAGGCACATACTGATTACATTAGGTGCGTGGCAGTTCATCCTACCCTTCCTTATGTGCTGTCATCATCTGATGATATGCTTATAAAGCTTTGGGATTGGGAGAAAGGCTGGGCTTGCACTCAAATATTTGAGGGGCATTCTCATTATGTAATGCAAGTAACATTTAATCCTAAAGACACCAACACCTTTGCCAGTGCATCTCTCGATCGCACCATAAAGATTTGGAATCTTGGCTCTCCTGACCCCAATTTTACATTGGATGCCCATCAGAAAGGAGTGAACTGTGTTGATTACTTTACAGGTGGTGACAAACCTTATCTAATAACTGGTTCTGATGATCACACTGCTAAGGTGTGGGACTATCAGACCAAAAGTTGTGTTCAGACTCTAGACGGTCACACACACAATGTGTCTGCTGTTTGCTTCCATCCTGAACTTCCTATAATCATTACTGGTTCCGAGGATGGTACAGTACGCATTTGGCACTCAACAACTTATAGGCTTGAGAACACACTAAATTATGGTCTCGAAAGAGTTTGGGCTATTGGATATATGAAAGGTTCACGCCGTGTTGTGATTGGCTATGATGAGGGAACTATCATGGTCAAACTTGGTCGAGAAGAGCCTGTAGCCAGCATGGATAACAGTGGGAAAATTATTTGGGCTAAGCATAATGAAATTCAGACAGTCAATATAAAGAGTGTAGGAGCAGATGTGGAGGTGGCTGATGGAGAAAGGTTACCTTTGGGTGTCAAGGAGTTGGGCACCTGCGATCTCTACCCACAGTCTTTAAGGCACAATCCAAATGGGAGATTTGTTGTTGTATGCGGAGATGGTGAGTATATTATATACACTGCTTTGGCATGGAGAAACAGGTCATTTGGTTCAGCACTGGAGTTTGTTTGGTCTTCGGATGGAGAATATGCTGTCAGAGAAAGTACATCAAGGATTAAAATATTTAGCAAAAATTTCCAGGAAAAGAAGAGTATCCGACCAACATTTTCAGCTGAACGAATATTTGGTGGTACTTTACTGGCAATGTGCTCAAATGATTTTATCTGCTTTTATGATTGGGCTGAATGTAGGTTGATCCGTCGCATTGATGTTAATGTGAAAAACCTCTACTGGGCTGATAGTGGTGATCTTCTGGCAATTGCAAGTGATACCTCTTTCTACATCCTGAAGTACAATCGTGATGTTGTTGCATCATCTTTGGATAGTGGAAGACCTGTAGATGAACAAGGTGTGCAAGATGCCTTTGATCTCCTTCATGAAATGAATGAACGTGTCAGGACAGGCATCTGGGTTGGGGATTGCTTTATCTACAACAATTCCTCTTGGAGGCTTAATTACTGTGTTGGTGGTGAGGTAACTACAATGTTTCATTTGGACCGCCCTATGTACTTGCTGGGATATCTTGCCAGCCAAAGTAGGGTTTATTTGATAGATAAAGAGTTCAACGTTATGGGGTACACACTGCTTTTAAGCTTAATTGAGTACAAGACTCTTGTGATGCGTGGTGATTTGGAAAGAGCCAATGAAGTTCTACCATCAATTCCTAAAGAGCATCATAACAGCGTGGCTCGTTTTCTGGAATCACGAGGGATGATAGAGGATGCTCTTGAAGTAGCTACTGACCCTGATTACCGATTTGAGCTAGCCATACAGCTTGGAAGATTAGAGGTTGCTAAGAGTATTGCCACAGAAGTGCATAGTGAGTCTAAGTGGAAGCAGTTGGGTGAATTAGCTATGTCTACTGGCAAGTTAGAAATGGCTGAGGAGTGTTTAAAGCATGCAATGGACTTGAGTGGTTTGTTACTGCTTTATTCTTCTTTAGGAGATGCTGAAGGAATATCAAAACTTGCAACCCTTGCTAAAGAGCAAGGGAAGAACAATGTCGCATTCCTTTGCTTGTTTATGTTGGGTAAGCTTGAAGACTGCCTTCAATTGTTGGTAGAAAGCAATCGGATTCCTGAGGCAGCTTTAATGGCACGATCTTATCTTCCGAGTAAGGTCTCAGAGATAGTAGCAATTTGGGGAAAAGATCTCAGCAAGGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAGGAGTATCCCAATTTGTTTGAAGACTGGCAAGTTGCACTTGCTGTTGAATCTAAAGCTGTGGAAACAAGGGGCATTTACCCTCCTGCAGAGGAGTACCTCAACCATGCTGATGAATCACGTGTGACCCTTGTTGAAGCGTTCAGAAACATGCAGATTGAAGAAGCAGAGGAGCCTCTTGAGAATGGGAACTCAAATCCTGAGTTGTCTGAACAAAATGGAGAAGAGCACAATACAGAGGAACTTAATGGAGAGGTAGGAAGTCAAGAGGAGGCAGTTGTAGTCGATGCTGATTCTGCAGATGGTGCAGTACTTGTTAATGGCAACGAAGCTGACGAAGAGTGGGGTACGAATAATGAAGGAGCCCCGTCAGCCTAA 2754 0.4267 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYMKGSRRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADVEVADGERLPLGVKELGTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESTSRIKIFSKNFQEKKSIRPTFSAERIFGGTLLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLLAIASDTSFYILKYNRDVVASSLDSGRPVDEQGVQDAFDLLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEVLPSIPKEHHNSVARFLESRGMIEDALEVATDPDYRFELAIQLGRLEVAKSIATEVHSESKWKQLGELAMSTGKLEMAEECLKHAMDLSGLLLLYSSLGDAEGISKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWGKDLSKVNPKAAESLADPEEYPNLFEDWQVALAVESKAVETRGIYPPAEEYLNHADESRVTLVEAFRNMQIEEAEEPLENGNSNPELSEQNGEEHNTEELNGEVGSQEEAVVVDADSADGAVLVNGNEADEEWGTNNEGAPSA 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1603 917 PIRSF Beta'-COP 2 883 IPR016453 -
Dere12g1603 917 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Dere12g1603 917 Gene3D - 11 300 IPR015943 GO:0005515
Dere12g1603 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Dere12g1603 917 Gene3D - 590 798 - -
Dere12g1603 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Dere12g1603 917 MobiDBLite consensus disorder prediction 848 917 - -
Dere12g1603 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Dere12g1603 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Dere12g1603 917 FunFam Coatomer subunit beta 11 300 - -
Dere12g1603 917 CDD WD40 17 297 - -
Dere12g1603 917 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Dere12g1603 917 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Dere12g1603 917 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Dere12g1603 917 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Dere12g1603 917 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Dere12g1603 917 Pfam WD domain, G-beta repeat 132 171 IPR001680 GO:0005515
Dere12g1603 917 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Dere12g1603 917 PANTHER COATOMER 5 313 - -
Dere12g1603 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Dere12g1603 917 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Dere12g1603 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Dere12g1603 917 SMART WD40_4 46 85 IPR001680 GO:0005515
Dere12g1603 917 SMART WD40_4 174 215 IPR001680 GO:0005515
Dere12g1603 917 SMART WD40_4 218 257 IPR001680 GO:0005515
Dere12g1603 917 SMART WD40_4 131 171 IPR001680 GO:0005515
Dere12g1603 917 SMART WD40_4 4 43 IPR001680 GO:0005515
Dere12g1603 917 SMART WD40_4 88 127 IPR001680 GO:0005515
Dere12g1603 917 CDD Coatomer_WDAD_beta-like 304 779 - -
Dere12g1603 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Dere12g1603 917 SUPERFAMILY NHL repeat 221 492 - -
Dere12g1603 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Dere12g1603 917 FunFam Coatomer subunit beta 590 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1603 Dere-ChrDere12 28514770 28523881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1603 15 367 Miscellaneous Gene Families AT5G08390 20.166 1.29e-10 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1603 12 28514770 28523881 Dere11g1705 11 30735006 30744071 CCT
Dere12g1603 12 28514770 28523881 Dere12g1603 12 28514770 28523881 ECH