Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1522 ATGGCATCTCGCAGACAAATTGCTGCCATGAAACAATCCCTTTTTGATCAGGGCCATCTGGATGAACAGTTCATTCAACTGGAGGAACTGCAGGATGATGCTAATCCTAACTTTGTTGAAGAAATTGTCACTCTTTACTTCCGGGATTCTTCAAGACTTATATCAAACATGGAGCAAGCATTGGAGAGGAACCCACTGGAATTTAACAGGCTAGACTCTATTATGCAACAGTTCAAAGGAAGCAGCTCAAGCATCGGAGCCAAAAGAGTGAAAGCAGAGTGCACTCTGTTAAGGGAATATTGCAGGGCAGGAAATGCAGAAGGATGCAAGAGGAGCTTCCAACAACTGAAGAAAGAATATGCCACACTGAGAAAGAAGCTTGAAGCTTATTTTCAGTTAGCAAGGCAAGCTGGGCCCGTTGAGACAGCATGTCGCCCCAGTACATATAACTATTCCAATACAACTGCGTCCATCAAGTTTAAGTAG 486 0.4362 MASRRQIAAMKQSLFDQGHLDEQFIQLEELQDDANPNFVEEIVTLYFRDSSRLISNMEQALERNPLEFNRLDSIMQQFKGSSSSIGAKRVKAECTLLREYCRAGNAEGCKRSFQQLKKEYATLRKKLEAYFQLARQAGPVETACRPSTYNYSNTTASIKFK 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1522 161 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 4 136 IPR036641 GO:0000160
Dere12g1522 161 FunFam Histidine-containing phosphotransfer protein 4 1 142 - -
Dere12g1522 161 Pfam Hpt domain 41 124 IPR008207 GO:0000160
Dere12g1522 161 Coils Coil 106 133 - -
Dere12g1522 161 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 35 130 IPR008207 GO:0000160
Dere12g1522 161 Gene3D HPT domain 2 143 IPR036641 GO:0000160
Dere12g1522 161 PANTHER PHOSPHORELAY INTERMEDIATE PROTEIN YPD1 1 139 IPR045871 GO:0000160|GO:0009927|GO:0043424
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1522 Dere-ChrDere12 27763235 27764823 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1522 12 27763235 27764823 Dere11g1604 11 29650541 29651950 CCT
Dere11g1604 11 29650541 29651950 Dere12g1522 12 27763235 27764823 ECH
Dere12g1522 12 27763235 27764823 Dere12g1522 12 27763235 27764823 ECH