Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1454 ATGAACGGTGGCGATGAGGTCGTCGCAGCTCCGGCGGGTCCACCGCAGCCGCTGGAGTGGAAATTCTCGCAGGTTTTTGGTGAACGTACGGCCGGGGAAGAAGTTCAGGAAGTGGACATAATTTCTGCCATTGAATTTGACAAATCTGGTGATCATCTTGCTACTGGTGATCGTGGTGGTCGAGTAGTTCTCTTTGAAAGGACAGATACAAAAGACCACGGTGGATCCAGAAGGGACTTGGAAAGGATGGACTATACAATAAGTAGGCATCCTGAGTTCCGTTATAAAACTGAGTTTCAGAGTCATGAACCTGAGTTTGATTATCTTAAGAGCTTGGAAATTGAAGAGAAAATAAACAAAATCAGATGGTGCCAAACAGCCAATGGTGCCCTATTCCTTCTATCTACAAATGATAAGACCATCAAATATTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTTCTGAGATGAACATTGACCCTTCGAAAACTATGGGAAATGGCTGTATTGGCAGTATTGCAAGTTCAAGTAATTCAAGTAGCCCTAAGCCATATCTTTCAAATGGAGGATCTTCAGATAAATCATACAGTTATCTGAGCAATGACTTCTCATTTCCACCTGGTGGCATCCCATCATTAAGATTACCTGTGGTAGTAACCAGCCATGAGACCAGCCTCGTAGCTCGATGTCGTAGAGTATATGCCCATGCCCATGATTATCATATCAATTCTATATCAAGTAACAGTGATGGCGAAACTTTCATATCTGCTGATGATTTGCGGATAAATCTTTGGAACCTAGAAATTAGCAATCAAAGTTTTAATATTGTAGATGTAAAGCCTGCAAACATGGAGGATCTGACTGAGGTTATAACATCAGCCGAGTTCCACCCTACCCACTGTAATATGTTGGCCTATAGCAGCTCAAAGGGTTCAATCCGTCTAGTTGATTTGCGCCAGTCGGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAGGCCCCGGGTTCCAGATCATTTTTTACAGAGATTATTGCTTCGATCTCAGATATAAAATTTGGAAAGGATGGCAGATATATACTTAGTCGTGATTACATGACTCTAAAGTTATGGGACATTAATATGGATTCTGGCCCAGTTGCAACTTTCCAGGTTCATGAATATCTAAGACCTAAGCTGTGTGATTTATATGAAAACGATTCAATTTTTGATAAGTTCGAGTGTTGTCTGAGTGGTGATGGATTGCGTTTAGCAACTGGTTCTTACAGCAACCTATTCCGTGTGTTTGGCTGCATCCCGGGAAGTGCCGAGGCTACAACCTTGGAAGCCAGTAAAAATCCAATGAGGCGACAAGTTCAGACCCCTGCAAGACCTTCTAGATCACTGGGAAGTAGTTTAACTCGAGTTGTAAGACGAGGAGCTGATAGTCCAGGTGTTGATGCAAATGGGAACTCTTTTGATTTTACTACGAAGTTGCTGCACTTAGCATGGCACCCAACTGAAAATTCAATTGCCTGTGCTGCTGCAAATAGCTTGTACATGTACTATGCATAA 1560 0.4218 MNGGDEVVAAPAGPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYTISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKYWKVQEKKVKKISEMNIDPSKTMGNGCIGSIASSSNSSSPKPYLSNGGSSDKSYSYLSNDFSFPPGGIPSLRLPVVVTSHETSLVARCRRVYAHAHDYHINSISSNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRLATGSYSNLFRVFGCIPGSAEATTLEASKNPMRRQVQTPARPSRSLGSSLTRVVRRGADSPGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1454 519 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 200 - -
Dere12g1454 519 Pfam WD domain, G-beta repeat 230 266 IPR001680 GO:0005515
Dere12g1454 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 266 293 IPR000009 GO:0000159|GO:0019888
Dere12g1454 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 323 350 IPR000009 GO:0000159|GO:0019888
Dere12g1454 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Dere12g1454 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Dere12g1454 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Dere12g1454 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 238 265 IPR000009 GO:0000159|GO:0019888
Dere12g1454 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 294 322 IPR000009 GO:0000159|GO:0019888
Dere12g1454 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 379 404 IPR000009 GO:0000159|GO:0019888
Dere12g1454 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 351 378 IPR000009 GO:0000159|GO:0019888
Dere12g1454 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 488 517 IPR000009 GO:0000159|GO:0019888
Dere12g1454 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 405 431 IPR000009 GO:0000159|GO:0019888
Dere12g1454 519 MobiDBLite consensus disorder prediction 447 466 - -
Dere12g1454 519 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Dere12g1454 519 SMART WD40_4 227 266 IPR001680 GO:0005515
Dere12g1454 519 SMART WD40_4 378 432 IPR001680 GO:0005515
Dere12g1454 519 SMART WD40_4 277 317 IPR001680 GO:0005515
Dere12g1454 519 SMART WD40_4 105 145 IPR001680 GO:0005515
Dere12g1454 519 SMART WD40_4 336 374 IPR001680 GO:0005515
Dere12g1454 519 SMART WD40_4 31 66 IPR001680 GO:0005515
Dere12g1454 519 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 212 515 - -
Dere12g1454 519 SUPERFAMILY WD40 repeat-like 39 511 IPR036322 GO:0005515
Dere12g1454 519 PIRSF PPA2_B55 11 519 IPR000009 GO:0000159|GO:0019888
Dere12g1454 519 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 15 519 IPR000009 GO:0000159|GO:0019888
Dere12g1454 519 Gene3D - 77 517 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1454 Dere-ChrDere12 26762783 26769549 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1454 12 26762783 26769549 Dere11g1547 11 28350902 28358573 CCT
Dere11g1547 11 28350902 28358573 Dere12g1454 12 26762783 26769549 ECH
Dere12g1454 12 26762783 26769549 Dere12g1454 12 26762783 26769549 ECH