Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1076 ATGACTGCTGTTGCTACGATACCATGCAATCTGTTAGAAAATCTAATGAGGTGCCAATTCATTTTAGGATCTTTCCTTCTGTGGGCTGTGGTCCCCCCTTACAACTCTATGGCGGGTGAAACATCATGGATCAGCCACTACCTTGATAACATACCCAAGGAGACTAGGGAATTTGATTCTTTTTTAGAACTTGGTGATGAAAGTGACAAAGAAGTCACTACTGTTTCTGTGGATGTTATTTTGCCTGATGATTTGTTGGAACGTATCCTAGCTTATCTCCCCATTGCCAGCATCTTCAGAGCAGGTTGTGTTTGTAAAAGATGGCAAGAAATTGTTACTTCAAAGAGATTCCTGTGGAATCTTTCACATGTTCTGCCGCAGAAACCTTGGTACTTTATGTTTACAAGCTCTGATGAACCAATTGGTTATGCTTATGACCCCATCCTTCGGAAATGGTATGGCATTGAACTTCCCTGCATTGACACTTCTAATTGGTTTATTGCGTCATCATGCGGCTTGGTTTGCTTCATGGACAATGACAGTAGAAGTGAATTATTCATGTGCAATCCTATTACTAAAGTCTGCCAGAAGCTTGAGGAGCCTCCTGGTTCCAAATTTTCTGATTACAGTGCACTAGCAATTTCAGTGAACAGAATGTCACACAGTTATAATGTTGCAATTGTTAAATCAAAGCAAGTCCCTGAGAACTTCTTCCAGTGGGATATTTCAATTCATATATACAATTCAGAAGGAAAGACCTGGGTGACCAGTTTAACAGAGGTTTTGATGGGGTGGAGAGGTGGTGATGAGAGCGTGATATGTAATGGGGTGCTGTATTTTCTGGTATATTCAACTGGGGGTAGTCAGCCAGAAAATCGTCATGCCCTCGTTGCATATAATATGGCAAACCGTTCTTCTCAGTGTTCCTTGACAAGGAGCTTTATTTCTATACCTTGTCCTCTAACATGTGGTCGTCTGATGAATTTGAAGGAGAAGCTTGTAATGGTGGGAGGACTTGGTAAACTAGATCGGCCTGACATTATAAAAGGAATTGGCATCTGGGTTCTGAATGATAGGAAGTGGGACGAGATTGCTCGAATGCCCCACAAATTCTTTCAAGGCTTTGGAGAGTTTGATGATGTCTTTGCTAGCAGTGGCACAGATGATCTAATATACATTCAAAGCTATGGAGCTTCGGCACTTCTCATATATGACATGAACCATAAACTATGGAAATGGTCACAGAAGTGCCCAGTGACAAAAAGGTTTCCACTGCAGCTTTTCACCGGATTTTGCTTCGAACCCAGGCTTGAAATTGCTCCATAG 1326 0.4178 MTAVATIPCNLLENLMRCQFILGSFLLWAVVPPYNSMAGETSWISHYLDNIPKETREFDSFLELGDESDKEVTTVSVDVILPDDLLERILAYLPIASIFRAGCVCKRWQEIVTSKRFLWNLSHVLPQKPWYFMFTSSDEPIGYAYDPILRKWYGIELPCIDTSNWFIASSCGLVCFMDNDSRSELFMCNPITKVCQKLEEPPGSKFSDYSALAISVNRMSHSYNVAIVKSKQVPENFFQWDISIHIYNSEGKTWVTSLTEVLMGWRGGDESVICNGVLYFLVYSTGGSQPENRHALVAYNMANRSSQCSLTRSFISIPCPLTCGRLMNLKEKLVMVGGLGKLDRPDIIKGIGIWVLNDRKWDEIARMPHKFFQGFGEFDDVFASSGTDDLIYIQSYGASALLIYDMNHKLWKWSQKCPVTKRFPLQLFTGFCFEPRLEIAP 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1076 441 NCBIfam F-box protein interaction domain 171 406 IPR017451 -
Dere12g1076 441 ProSiteProfiles F-box domain profile. 81 122 IPR001810 GO:0005515
Dere12g1076 441 PANTHER F-BOX FAMILY PROTEIN 41 438 IPR045048 -
Dere12g1076 441 SMART fbox_2 81 121 IPR001810 GO:0005515
Dere12g1076 441 Gene3D - 71 121 - -
Dere12g1076 441 FunFam F-box/kelch-repeat protein At3g61590 family 127 425 - -
Dere12g1076 441 CDD F-box_AtFBW1-like 81 117 - -
Dere12g1076 441 Pfam F-box domain 81 118 IPR001810 GO:0005515
Dere12g1076 441 SUPERFAMILY Galactose oxidase, central domain 134 419 IPR011043 -
Dere12g1076 441 SUPERFAMILY F-box domain 80 180 IPR036047 GO:0005515
Dere12g1076 441 FunFam F-box/kelch-repeat protein At3g61590 74 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1076 Dere-ChrDere12 20724651 20726585 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1076 12 20724651 20726585 Dere12g1076 12 20724651 20726585 ECH