Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0251 ATGGCTAAGGATCGGAAAATCGGCGTGGCTCTTGACTTCTCCAAGAGCAGCAAGAACGCTCTCAAATGGGCTCTTGAGAATCTCGCCGATAAGGGCGACACCTTTTACGTCATCCATATCAATCCCAACTCTCTCGATGAGTCCCGTAACCAGCTTTGGGCTAAATCTGGTTCTCCTCTTATTCCTTTGGCAGAGTTCAGAGAGCCAGAGATTATGAAGAAGTACGATGTTCAAACTGATATTGAGGTTCTTGATTTGCTTGATACCGGTGCCAGACAGAAAGAGGTGAACATTGTGACAAAAGTGTACTGGGGGGATGCGAGGGAGAAAATTCTGGATGCTATTGAAGATCTGAAGCTGGACTCTCTGGTAATGGGAAGCAGAGGCCTTAGCACTATCAAAAGGATAATATTGGGAAGTGTCAGCAACTTTGTTGTCACTCATGCTTCTTGCCCAGTGACCATTGTGAAGGATTCAAGCTGCAGCAACTAG 492 0.4614 MAKDRKIGVALDFSKSSKNALKWALENLADKGDTFYVIHINPNSLDESRNQLWAKSGSPLIPLAEFREPEIMKKYDVQTDIEVLDLLDTGARQKEVNIVTKVYWGDAREKILDAIEDLKLDSLVMGSRGLSTIKRIILGSVSNFVVTHASCPVTIVKDSSCSN 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0251 163 PRINTS Universal stress protein signature 117 129 IPR006015 -
Dere12g0251 163 PRINTS Universal stress protein signature 135 157 IPR006015 -
Dere12g0251 163 PRINTS Universal stress protein signature 4 22 IPR006015 -
Dere12g0251 163 CDD USP_Like 6 156 - -
Dere12g0251 163 PANTHER IMP2'P 1 161 - -
Dere12g0251 163 Gene3D HUPs 2 162 IPR014729 -
Dere12g0251 163 Pfam Universal stress protein family 5 157 IPR006016 -
Dere12g0251 163 FunFam Universal stress protein family protein 1 160 - -
Dere12g0251 163 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 5 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0251 Dere-ChrDere12 4295683 4297525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0251 3 156 Receptor kinase-like Gene Family AT5G35380 27.044 1.68e-07 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0251 12 4295683 4297525 Dere11g0313 11 5513720 5514744 CCT
Dere12g0251 12 4295683 4297525 Dere12g0251 12 4295683 4297525 ECH