Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1802 ATGTCGTCTCTCAGTCGAGAATTGGTGTTCTTGATTTTACAGTTTCTGGATGAGGAAAAGTTCAAAGAGACTGTTCACAAGCTTGAACAGGAGTCTGGTTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGCAATTGGGATGAGGTTGAAAGATACCTCTCTGGTTTCACAAAAGTTGATGATAATCGGTATTCAATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTACCTTGAAGCGTTAGATAAGCACGACAGGTCCAAGGCTGTAGAAATATTGGTGAAGGATTTAAAGGTTTTTTCCACATTCAATGAAGACCTATTCAAGGAAATCACACAGCTCTTGACGTTGGAGAATTTTAGGGAAAATGAACAATTGTCAAAGTATGGAGACACCAAATCTGCGAGGGCAATCATGTTGGTTGAACTTAAAAAACTGATTGAAGCAAATCCCTTATTCCGTGACAAATTGCAGTTTCCCAACCTTAAAAGCTCAAGGTTACGGACTCTTATCAATCAAAGCCTGAATTGGCAGCATCAACTCTGTAAGAACCCACGGCCAAATCCAGATATAAAAACTCTTTTTGTGGATCACTCATGTGGACAACCAAACGGTGCACGGGCTCCATCACCTGCTAATGGTCCGCTACTTGGATCCTTACCAAAGGCTGGAGGGTTTCCTCCACTAGGTGCACATGGGCCTTTTCAACCTACACCAGCACCAGTGCCGACGCCCCTGGCAGGTTGGATGTCAAATCCTACCACTGTAGCTCATGCTGCAGTTTCTGGAGGAGGAGCTATTGGTCTTGGTGCTCCATCAATCCCTGGAGCTTTGAAGCACCCAAGGACCCCTCCAACTAACCCATCTGTCGATTACCCATCCGGAGATTCTGATCACGTATCTAAGAGAACAAGACCAATGGGAATGTCAGATGAGGTGAATCTACCTGTTAATGTGTTGCCAGCTGCATTACCAGGTCATGGGCACGGCCAATCTTTTAATGCACCTGATGACATGCCGAAGACTGTCACACGAACTCTCAATCAGGGTTCATCTCCTATGAGCATGGACTTTCATCCAGTTCAACAGAGCTTACTCCTTGTTGGTACAAATGTCGGGGATATTGCTTTGTGGGAAGTGGGCTCTCGGGAGCGATTGGTCTTAAGGAACTTTAAAGTTTGGGATATCAGTGCTTGTTCAATGCCACTTCAGGCTGCTCTTGTCAAAGATCCAAGTGTTTCTGTCAACCGTGTGATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCTTACTCAAGGCATATTGTTCAGATATATGCCTACCATGGTGGAGATGATGTGCGTCAGCACCGGGAGATTGATGCTCATGTTGGTGGAGTCAATGATCTAGCATTTTCCCATCCAAATAAGCAACTATGTGTCATAACCTGTGGTGATGATAAGACCATTAAGGTCTGGGATGCTGCTACTGGTGCAAAACAATATACTTTTGAAGGTCACGAGGCTCCTGTCTATTCTGTTTGTCCTCATTATAAAGAAAATATTCAGTTTATATTTTCAACAGCATTAGATGGAAAGATAAAGGCATGGTTGTATGACAATTTGGGGTCTCGTGTTGATTATGATGCTCCTGGTCGTTGGTGCACAACCATGGCTTATAGTGCTGATGGTACAAGGCTCTTTTCATGTGGGACAAGCAAAGATGGGGAATCCTCTATTGTTGAGTGGAATGAAAGTGAAGGTGCTGTTAAAAGGACTTATCAAGGATTCCGTAAACGATCATTGGGTGTTGTGCAATTTGATACAACAAAAAATCGATTTTTGGCTGCTGGTGATGATTTCTCCATTAAATTCTGGGATATGGACAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGAGGTCTACCTGCAAGCCCACGCATCCGTTTCAACAAGGATGGAAGTCTATTAGCTGTTTCTGCAAATGAGAATGTAATTAAAATTTTAGCCAATGCCGACGGCATAAGATTGCTGCGAACATTAGAAAATTCTTTATATGAGGCATCAAGAACATCTGAAGCCATTACAAAGCCCACAATAAGTCCAATTTCAGCTGCTGCTGCAAGTAGTGCTGCACTTGCAGAGAGGGGCTCATCTGTAGTAGCCATTGCTGGAATGAATGGAGATGCCCGGAATATGGGTGATGTTAAACCTAGAATAACTGAAGAATCCAATGACAAGTCCAAGATACGGAAGCTCACTGAAATCAATGAATCATCTCAATGTAGATCCTTGAAGCTACCTGAGAACGTGAGAGTGACCAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTGGCATTATCATCAAATGCCATTCATCTGCTCTGGAAATGGCAGCGAAGTGACAGCAATTCATCTGGCAAGGCCACTGCTAGTGTGTCACCTCACTTGTGGCAACCATCGAGTGGCACCCTGATGACCAATGACATTTCTGACAGCAATCCTGAGGATGCTGTGCCCTGTTTTGCTCTCTCAAAAAATGATTCTTATGTAATGTCAGCATCAGGAGGGAAGATTTCACTGTTCAATATGATGACTTTTAAGACAATGACGACTTTCATGCCTCCACCACCTGCAGCAACTTTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCTATTGGAATGGATGATTTCACCATTCAGATATATAATGTCCGTGTGGATGAGGTTAAAAGTAAACTCAAAGGTCACACCAAAAGAATAACTGGCCTTGCTTTTTCTCATGCATTGAATGTGTTAGTCTCATCCGGGGCAGATGCTCAGCTTTGTGTGTGGAATACTGATGGATGGGAAAAGCAGAGGAGTAGATTCTTACAGCTTCCTACAGGGAGGACTTCAACTGCGCAGGCAGAAACACGTGTACAGTTTCATCAAGATCAGATACACTTCTTGGTTGTACATGAAACTCAGCTTGGCATATATGAAACAGCAAAACTAGAATGTCTAAATCAGTGGTCCCCAAGAGATCCTACAGCACGAATATCGGCTGCAACTTTCTCATGTGATAGCCAGCTGATATATGCAAGCTTTATGGATGCAAAAGTTTGTGTATTCAGTGCATCAAGCCTTGGATTACGATGTCTTATCAATCCTTCTGCTTATCTTTCTGCAGGTGTCAGCAGTTCCAACGTACAACCGCTCGTGGTTGCAGCACACCCACAAGAACCAAATCAATTTGCTGTAGGACTGTCAGATGGTGGAGTTCATGTATTTGAGCCCCTTGAGTCTGAAGGCAAGTGGGGTGTGCCTTCTCCCATTGAGAATGGGTCAGCAAGCAATGTGGTAGCTACTTCAATAGGAGTTTCTTCAGATCAAGCTCAGAGATGA 3399 0.4301 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFSTFNEDLFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANGPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSIPGALKHPRTPPTNPSVDYPSGDSDHVSKRTRPMGMSDEVNLPVNVLPAALPGHGHGQSFNAPDDMPKTVTRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVLRNFKVWDISACSMPLQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYAYHGGDDVRQHREIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGSLLAVSANENVIKILANADGIRLLRTLENSLYEASRTSEAITKPTISPISAAAASSAALAERGSSVVAIAGMNGDARNMGDVKPRITEESNDKSKIRKLTEINESSQCRSLKLPENVRVTKISRLIYTNSGNAILALSSNAIHLLWKWQRSDSNSSGKATASVSPHLWQPSSGTLMTNDISDSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDFTIQIYNVRVDEVKSKLKGHTKRITGLAFSHALNVLVSSGADAQLCVWNTDGWEKQRSRFLQLPTGRTSTAQAETRVQFHQDQIHFLVVHETQLGIYETAKLECLNQWSPRDPTARISAATFSCDSQLIYASFMDAKVCVFSASSLGLRCLINPSAYLSAGVSSSNVQPLVVAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPSPIENGSASNVVATSIGVSSDQAQR 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1802 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 918 959 IPR001680 GO:0005515
Dere11g1802 1132 Gene3D - 992 1130 IPR015943 GO:0005515
Dere11g1802 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 602 633 IPR001680 GO:0005515
Dere11g1802 1132 SMART WD40_4 911 950 IPR001680 GO:0005515
Dere11g1802 1132 SMART WD40_4 828 865 IPR001680 GO:0005515
Dere11g1802 1132 SMART WD40_4 584 624 IPR001680 GO:0005515
Dere11g1802 1132 SMART WD40_4 538 581 IPR001680 GO:0005515
Dere11g1802 1132 SMART WD40_4 627 668 IPR001680 GO:0005515
Dere11g1802 1132 SMART WD40_4 868 908 IPR001680 GO:0005515
Dere11g1802 1132 SMART WD40_4 405 444 IPR001680 GO:0005515
Dere11g1802 1132 SMART WD40_4 494 535 IPR001680 GO:0005515
Dere11g1802 1132 SMART WD40_4 450 491 IPR001680 GO:0005515
Dere11g1802 1132 SMART WD40_4 344 383 IPR001680 GO:0005515
Dere11g1802 1132 SMART WD40_4 1064 1096 IPR001680 GO:0005515
Dere11g1802 1132 SMART WD40_4 1002 1043 IPR001680 GO:0005515
Dere11g1802 1132 ProSitePatterns Trp-Asp (WD) repeats signature. 478 492 IPR019775 -
Dere11g1802 1132 SMART Lish 4 36 IPR006594 GO:0005515
Dere11g1802 1132 MobiDBLite consensus disorder prediction 279 306 - -
Dere11g1802 1132 FunFam Topless-related protein 3 737 971 - -
Dere11g1802 1132 Pfam WD domain, G-beta repeat 917 950 IPR001680 GO:0005515
Dere11g1802 1132 Pfam WD domain, G-beta repeat 455 491 IPR001680 GO:0005515
Dere11g1802 1132 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1114 IPR027728 GO:0006355
Dere11g1802 1132 Gene3D - 330 548 IPR015943 GO:0005515
Dere11g1802 1132 SMART ctlh 34 92 IPR006595 -
Dere11g1802 1132 Gene3D - 733 966 IPR015943 GO:0005515
Dere11g1802 1132 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Dere11g1802 1132 FunFam Topless-related protein 1 324 542 - -
Dere11g1802 1132 SUPERFAMILY WD40 repeat-like 835 1097 IPR036322 GO:0005515
Dere11g1802 1132 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 918 950 - -
Dere11g1802 1132 Gene3D - 552 710 IPR015943 GO:0005515
Dere11g1802 1132 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Dere11g1802 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 457 500 IPR001680 GO:0005515
Dere11g1802 1132 SUPERFAMILY WD40 repeat-like 351 666 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1802 Dere-ChrDere11 31920766 31928045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1802 459 668 Miscellaneous Gene Families AT5G08390 23.721 1.83e-06 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1802 11 31920766 31928045 Dere11g1802 11 31920766 31928045 ECH