Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1801 ATGGGGGGAGCTTGTTCTAAGAAGCAAGAGCAGGACAGTGAAGATAGTTCTCATAGAGGACTTTTACGAAGATATTGCAAAAGTTGGAGTTTGAAATGGTCGAATTCATCATTGTCTTATCCTTCTATAGATTATCATTCACAAAAGGGAGAATGTCCATCATTGTTGGACTTGTGTGTTAAGAAAATATGTGAGGAGATCCATAAGTATAGCACATTTTCTTTGGTTCCACGGGATATAAGTCAGCAAATTTTTAATGAATTGGTGCATTCCCAACGTCTAACTGGTTCTTCCCTCAAAGCCTTTCAAGATTGTGATCTCCAGGATTTCTACTTGGGAGAATATCCTGGAGTGAATGACAGTTGGATGCACATCATTTCGTCACAGGGCTCATCTTTACTATCTGTGGATCTTTCTGGGTCTGATGTCACTGATTATGGGCTGACTTATCTTAAAGATTGCACAAATCTTTTAACCTTGAACCTTAATCACTGTGACCAGATTTCAGACTATGGTCTGGAATATATCAATGGTTTGTCAAACTTGAGAAGTTTGAGTTTTAGAAGAAACAATGCCATTTCTGCTCAAGGAATTCGTTCCTTTTCTGCTCTTGTTAACTTGGTTAAGTTGGATTTGGAGAGATGTCCTGGGATTCATGGAGGCCTTGTTCATCTTCAAGGTTTCACCAAGTTGGAATCTCTCAATATGAAGTGGTGTAATTGCATAACTGATGCTGACATGAAGCCTCTATCAGAGCTTACAAACTTGAAGAGCCTAGAGATTTCATGCAGTAAAGTCACAGATTTTGGCATCACTTTCTTAAAAGGATTACAAAAGCTTGCTTTACTGAACTTGGAGGGATGCCTTGTAACAGCTGCATGCTTGGATTCTCTAGCAGAGCTTCCTGCCCTGTCAAACTTGAATCTCAACAGATGTAAACTGTCAGATGATGGATGTGAAAAGTTTTCAGGACTGCAAAATTTGAAAGTTCTAAACTTGGGATTTAATGATTTAACAGATATGTGTTTAGCGCACTTAAAAGGATTGACAAAATTAGAGAGCTTGAACCTAGACTCATGTAGAATTGGTGATGAAGGATTGGTCAATCTGGCAGGCCTTCGGCAATTAAGATGCTTGGAATTGTCTGATACAGAAGTTGGAAGCAATGGGCTTAACCATATATCAGGATTGTCTTGTCTAGAGAAAATAAACCTGTCATTCACCGTGGTTAGTGATAGTGGTTTAAGACAATTGTGTGGACTCTCATCTCTGCAGTCACTTAATTTGGATGCTCGCCAAATTACTGATTCTGGACTAGCGGCCCTTACATGTTTGACTGGGCTTACTGACCTGGATTTGTTCGGTGCACAAATCACAGACTCTGGAACAAACTATTTGAGAAACTTTAAGAACCTGAGGTCGCTGGAAATGTGTGGTGGAAGATTGACTGATGATGGCGTCAAAAATATCAAAGAGCTTTCATCTTTGATGTGCTTAAATTTATCACAGAACTGCAATCTTACTGACAAATCCTTGGAGTTAATTTCTGGGCTGACTAGGCTGATATCTTTGAATGCTTCCAATTCTCGTGTCACCAATGCCGGTCTGCAGCATCTGAAAACGCTCAAGAATTTGAGATCTCTGACATTGGAGTCCTGTATGGTGACAGCAAATGACATTAAGAAACTTCAATCTGACCTCCCGAATCTGGTTAGCTTTCGGCCAGAGTAG 1731 0.3992 MGGACSKKQEQDSEDSSHRGLLRRYCKSWSLKWSNSSLSYPSIDYHSQKGECPSLLDLCVKKICEEIHKYSTFSLVPRDISQQIFNELVHSQRLTGSSLKAFQDCDLQDFYLGEYPGVNDSWMHIISSQGSSLLSVDLSGSDVTDYGLTYLKDCTNLLTLNLNHCDQISDYGLEYINGLSNLRSLSFRRNNAISAQGIRSFSALVNLVKLDLERCPGIHGGLVHLQGFTKLESLNMKWCNCITDADMKPLSELTNLKSLEISCSKVTDFGITFLKGLQKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCKLSDDGCEKFSGLQNLKVLNLGFNDLTDMCLAHLKGLTKLESLNLDSCRIGDEGLVNLAGLRQLRCLELSDTEVGSNGLNHISGLSCLEKINLSFTVVSDSGLRQLCGLSSLQSLNLDARQITDSGLAALTCLTGLTDLDLFGAQITDSGTNYLRNFKNLRSLEMCGGRLTDDGVKNIKELSSLMCLNLSQNCNLTDKSLELISGLTRLISLNASNSRVTNAGLQHLKTLKNLRSLTLESCMVTANDIKKLQSDLPNLVSFRPE 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1801 576 Gene3D Ribonuclease Inhibitor 301 373 IPR032675 -
Dere11g1801 576 Pfam Leucine Rich repeat 229 251 IPR001611 GO:0005515
Dere11g1801 576 Pfam Leucine Rich repeat 154 176 IPR001611 GO:0005515
Dere11g1801 576 FunFam F-box/LRR-repeat protein 14 299 382 - -
Dere11g1801 576 SUPERFAMILY RNI-like 125 461 - -
Dere11g1801 576 SMART LRR_CC_2 301 325 IPR006553 -
Dere11g1801 576 SMART LRR_CC_2 154 179 IPR006553 -
Dere11g1801 576 SMART LRR_CC_2 228 253 IPR006553 -
Dere11g1801 576 SMART LRR_CC_2 180 204 IPR006553 -
Dere11g1801 576 SMART LRR_CC_2 493 518 IPR006553 -
Dere11g1801 576 SMART LRR_CC_2 421 445 IPR006553 -
Dere11g1801 576 SMART LRR_CC_2 349 373 IPR006553 -
Dere11g1801 576 FunFam Predicted protein 118 219 - -
Dere11g1801 576 Gene3D Ribonuclease Inhibitor 379 457 IPR032675 -
Dere11g1801 576 Gene3D Ribonuclease Inhibitor 477 572 IPR032675 -
Dere11g1801 576 Gene3D Ribonuclease Inhibitor 119 219 IPR032675 -
Dere11g1801 576 Gene3D Ribonuclease Inhibitor 220 300 IPR032675 -
Dere11g1801 576 Pfam Leucine rich repeat 302 362 IPR001611 GO:0005515
Dere11g1801 576 SMART LRR_RI_2 253 279 - -
Dere11g1801 576 SMART LRR_RI_2 349 375 - -
Dere11g1801 576 SMART LRR_RI_2 397 423 - -
Dere11g1801 576 SMART LRR_RI_2 542 569 - -
Dere11g1801 576 SMART LRR_RI_2 301 327 - -
Dere11g1801 576 FunFam Leucine-rich repeat family protein 220 298 - -
Dere11g1801 576 PANTHER UNCHARACTERIZED 30 250 - -
Dere11g1801 576 SUPERFAMILY L domain-like 418 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1801 Dere-ChrDere11 31909760 31918195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1801 107 427 Receptor kinase-like Gene Family AT5G51350 27.273 5.80e-12 67.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1801 11 31909760 31918195 Dere11g1801 11 31909760 31918195 ECH