Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1788 ATGTTACCTCACCGCCGGTCGATAGACGAATCTCACACTCCTGATAGATTCATTCACCTTAACGTTGCTGTTCTATGTTCCCATCTTTCAAACCCTAATTCTGCAATTCATCATCAACCCAGAAATTCATCTATTATTTTTCTGTTCCTTCTTCAAGCAGCCAAGATGGTTCTAGCTCAGTTAGGGGGGAGCATATCTCGTGCTCTCCAGCAGATGAGCAATGCCACCATAATCGATGAGAAGGTCCTCAATGAGTGTCTTAATGAGATCACCCGTGCTCTTCTTCAATCTGATGTTCAATTCAAGCTCGTGCGAGACATGCAGACTAACATCAAGAAGATTGTCAACCTCGACGATCTCGCTGCTGGCCACAATAAACGCAAGATCATCCAACAAGCTGTTTTTAACGAACTCTGCAAAATGCTGGATCCTGGAAAGCCCTCTTTCACCCCAAAAAAAGGAAAAACAAGTGTTGTCATGTTTGTTGGCTTACAAGGGTCTGGAAAAACCACAACTTGTACAAAATATGCATATTATCATCAGAAGAAAGGCTGGAAGCCTGCTCTAGTATGTGCAGATACATTCAGGGCAGGTGCTTTTGATCAACTTAAGCAAAATGCCACTAAAGCTAAGATCCCTTTCTATGGCAGCTACATGGAGTCAGATCCTGTGAAAATTGCTGTGGAAGGTGTGGAAAGATTCAAGAAAGAAAATTGTGATCTTATAATTGTTGACACTAGTGGCCGGCACAAACAAGAAGCTGCCCTTTTTGAAGAAATGCGCCAAGTTTCTGAAGCAACAAAACCGGATCTTGTGATATTTGTTATGGATAGCAGTATTGGTCAGGCTGCATTTGATCAGGCTCAAGCATTTAAACAAAGTGTTGCTGTTGGAGCTGTAATTATTACCAAAATGGATGGCCATGCAAAGGGTGGTGGTGCTCTTAGTGCTGTTGCAGCAACAAAGAGTCCTGTCATATTTATTGGAACTGGAGAACATATGGATGAATTTGAAGTTTTTGATGTTAAACCTTTTGTCAGTCGTCTGTTAGGCATGGGTGACTGGTCTGGGTTTATGGACAAGATTCACGAAGTTGTTCCTATGGATCAACAGCCCGAACTGCTTCAAAAGCTGTCTGAAGGGAACTTCACCTTGAGGATTATGTATGAGCAGTTCCAGAACATACTTAAGATGGGTCCGATCAGCCAGGTGTTCTCAATGCTACCAGGATTTAGTGCTGAATTGATGCCGAAAGGCCGTGAGAAGGAAAGCCAAGCAAAAATTAAGCGTTACATGACAATGATGGATTCAATGACAAATGAAGAATTGGATAGCTCAAACCCAAAGTTCATTAATGAGTCACGTATGATGCGAATAGCTCGAGGGTCTGGTCGACAAGTTAGGGAAGTAATGGAGATGTTGGAGGAGTACAAACGTCTTGCAAAGATATGGAGCAAAATGAAAGGGCTTAAAATCCCCAAGAAGGGTGATATGAGTGCCCTATCCCGAAATATGAATGCCCAGCACATGAGCAAAGTCCTACCTCCACAGATGCTTAAGCAAATAGGAGGTATGGGTGGGTTACAGAACTTGATGAAGCAGATGGGTTCTTCTAAAGACATGATGGGAATGTTTGGCGGTGGTGATAAGTAG 1653 0.4271 MLPHRRSIDESHTPDRFIHLNVAVLCSHLSNPNSAIHHQPRNSSIIFLFLLQAAKMVLAQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRKIIQQAVFNELCKMLDPGKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPISQVFSMLPGFSAELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKFINESRMMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSSKDMMGMFGGGDK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1788 550 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 55 149 IPR036225 -
Dere11g1788 550 CDD SRP54_G 157 349 - -
Dere11g1788 550 SMART AAA_5 155 332 IPR003593 GO:0016887
Dere11g1788 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 353 IPR027417 -
Dere11g1788 550 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 324 337 IPR000897 GO:0005525|GO:0006614
Dere11g1788 550 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 56 538 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Dere11g1788 550 Gene3D - 146 340 IPR027417 -
Dere11g1788 550 SMART SRP54_N_2 57 142 IPR013822 GO:0005525|GO:0006614
Dere11g1788 550 SMART SRP54_3 156 351 IPR000897 GO:0005525|GO:0006614
Dere11g1788 550 FunFam Signal recognition particle GTPase 60 152 - -
Dere11g1788 550 FunFam Signal recognition particle 54 kDa subunit 145 340 - -
Dere11g1788 550 Pfam SRP54-type protein, helical bundle domain 61 138 IPR013822 GO:0005525|GO:0006614
Dere11g1788 550 FunFam Signal recognition particle 54 kDa protein 366 506 - -
Dere11g1788 550 SUPERFAMILY Signal peptide-binding domain 353 488 IPR036891 GO:0006614|GO:0008312|GO:0048500
Dere11g1788 550 Gene3D - 366 507 IPR036891 GO:0006614|GO:0008312|GO:0048500
Dere11g1788 550 Pfam SRP54-type protein, GTPase domain 157 351 IPR000897 GO:0005525|GO:0006614
Dere11g1788 550 Gene3D - 60 361 IPR042101 -
Dere11g1788 550 NCBIfam signal recognition particle protein SRP54 57 482 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Dere11g1788 550 Pfam Signal peptide binding domain 382 482 IPR004125 GO:0006614|GO:0008312|GO:0048500
Dere11g1788 550 Hamap Signal recognition particle 54 kDa protein [srp54]. 61 532 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1788 Dere-ChrDere11 31757176 31762010 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1788 11 31757176 31762010 Dere11g1788 11 31757176 31762010 ECH