Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1672 ATGGAGGCCAATGGAGGAAGTAAATGCGACCCAAAATTCCCTGCATTTCCCTTTAAACCCTACTCCATCCAGATCGATTTCATGAACGCCCTCTATCACTCTCTCGACCAAGGTGGCGTTTCCATGCTGGAGAGTCCCACTGGTACTGGGAAGACTATGAGTGTCATTTGTAGCGCTTTGCAATGGGTGCTTGATCGGAGGCGACAACAGGAATCAGTGGAAGCAGGGCGGGAATGTGGTAAGAATCAGGAAAATCATGGTGGGTCTCGTTCAGATGATGAGCCTGATTGGATGAGGGACTTTGTTGTGAAGAAAGAAATGCAAGTCCAACCTGAAACAATAAGCAAGAAGAAGGAGAAGTATGGATCTATATTAGGTAAACTTGATAAGAAGAATAACAGGGAAATTTGTAAAGGTTTTCAGGGTATGGGTGAAGATTCTCCTCCAGAAAAGGGGTTTAAGGTTTTGCATAATAAAATTGATGAAGTGCATGTGGACGTTATTGATAAGGAATTCTTACTTGATGAATATGAAAGTGAAAATGAGGAAGCTCTGGGCAATGTGAGATCGAAGAGGAAGGCTACTAAAAGTGTTTTAACTTCGTCCAGTGAAGAGGATGAGTCTGATGAGGAGGACGAGGTGGAGGAAAAGAAGTTGAAGGTTTATTTCTGTAGTCGAACGCATTCGCAGCTTTCGCAGTTCATAAAGGAATTACGGAAGACTGTCTTTGTTAATGAGATGGATGTTGTTTGTTTAGGCTCCAGGAAAAATCTTTGCATCAACGAAGAAGTAAGAAAACTTGGAAACTCCACACGCATAAATGAGCGATGCTTGGAACTCCAGAAGAAAAAGAAAAATGAACCTACAAAAATTAAGAATTTAAAAGCATGTACAAGAGTACAGAGAACAAAGACGTCATCTGGTTGCCCAATGCTTAGAAAACATAGACTACAAAGAGAATTCAGGAGTGAGTTATCTCAGAGAGGGGCCTTGGATATTGAAGATCTTGCTAACCTGGGAAGAAATTTGGGAACTTGTCCTTATTATGGCTCTAGAAGCATGGTTTTGAGAGCTGATCTTGTGGTGCTACCATATCAGTCACTTCTGTCGAAATCATCTCGTGAAGCACTTGGTCTGAATTTGAAATCCAATATTGTCATTATAGATGAAGCTCATAATTTAGCTGATTCACTCATCAGCATGTATGACTCCAAAATTACTTTATCACAGCTGGAAAATGTGCATTCCCATTTGGAGAGATACTTTGAGAAATTCTGTAATCTGTTAGGACCTGGTAACAGGAGATATATCCAAATTCTGATGGTTCTCACTCGAGTTTTTCTGCAAGTGCTAATCAGTGAGAAGGATGCAAGTCTTGTAGATTCTTGCCAAGACATAGAAAAGGCTTTTGAGGAAAGTAGGGCCTCTGAATATACCATGTCTATCAATGATTTTATGTTTGAACGAAATATCGACAATGTCAACTTGGTTAAGTTGGTGAAGTATATGAAGGAAAGCAATATCGTGCACAAGGTTTGTGGCTATGGAGAAAAGGTAGCTAGCTTGGGGAAAATTTCAACAAGTAATAAATTTGGAGAACATTGTGAGGAGGGAAGCACTCAGTCTGCATTTCAGGCACTAGCCGACATATTGCTATCGCTGATAAACAATGATAGTGATGGAAGGATAATCATTTCCAGGTCCAGACCAATGAACTCCTGGAAACAAGGAGGCTATATTAAATATGTTATGCTCAGTGGAGAGAAGATTTTTTCTGAGATTGTAGACCAAGCTCATGCTGTTCTATTAGTAGGGGGTACTCTGCAACCTATTGAAGAGACGAGAGAGCGACTCTTTCCATGGTTACCACCAAACCAGTTGCAATTCTTTTCATGTGGTCATATTGTCCCTCCACAGAGTATTATGCCAATTGCAGTTTCCCGTGGCCCTTCTGGCCGCTCCTTTGATTTTAGCTACTGCTCCAGGAGCTCACCAGATACTATGCGGGAGCTAGGTCTTCTTCTCTGTAATATGGTGACTGTGGTTCCAGAAGGGATTGTTGTTTTCTTCTCTTCTTTTGATTACGAAGGAAAAGTCTATGAAGAATGGGAATCTTCTGGCATCCTAGAGAGGATTACAAAGAGGAAGCGTATATTTAGAGAGCCTAGAAATAGTACAGATATTGAATTTGTTCTTAAGGAATATAAAGAAACTGTCAGCACATTCTCTAGTACAAATTTAAATGAAAACCCGGCATCTCATGGTGGTGCAGTGCTCCTTGCTGTTGTTGGCGGAAAGATATCTGAAGGGATCAACTTAAGTGATGGGATGGGTCGGTGCATAGTCATGGTTGGACTGCCATACCCTAGTCCATCTGACATTGAGTTGTTAGAGAGGATAAAGCACATTGAAGGTTATCGAAATTCAAGCTCCATTGAAACTCCTAGATTTTCTGCCAGTCATAATGTTTACAGTGGGGATATAAAAGGTGGTTTTGATATTTTAAGAAGTTGCAGTCACAGAGGAAAAGAATATTATGAGAATCTCTGCATGAAAGCTGTAAATCAATCAATAGGCAGGGCAATCCGTCACATTAATGACTATGCAGCAATTTTGTTGGTTGACGTGAGGTATGCATCTGATTCCTCAAAAAGGAGCTTTTCTCACCCAATCAACAAGCTCCCACAGTGGATAAAAGATCGTTTTGTTTCATCTACCAATAACTATGGCGAAGTCCATAGGTTGCTGCATCAGTTTTTCAAATTCAACAAAAAGGAGTTCGATAATCCTGATGCTCAGATTGTGAAGGTTGTGGGAGCCATAGATTCTTGGGACAAAATTGAAGAATACACGAGCTATAGCAGATTGAAACTGTGTCAGCTCTTGAAGGAAGAGCCACTTGGAGAAAGGTTCTGGCTTTTCACAGTAGAATCACAAATGCTGCTTGATGATACCATTCACAAGACCAAGGTTTTCTTTCACAGAACCCTCAGAAATTTCAAGTCTTTCTTCTTTGGAGGGTACAAAAGACTACCGAGATCTCTTTCCTTCAACCCTTTCTCTTGCAGCAGTGGCTATGCAGGAACCTACCCAAGAGACCAATTCTACAATGTTTTCTATGATCAGTTGCAGTCAGATCTAAGCAGAATCACAAGGGTCGAAAACAATGGCTTATCCAGGTCTAAGGAGCCACCGGCAATGGAAGAAGCTTCTTGTACTGGAAACTTGATGACTTTTGCCAAGCAAAGTGAACGAAAGAGCATATATGAAGGCAGAGCGAAAAAAAAGAACAAAGGGAACTCTCAAATTTGTAAGAATGGAGATTTAATTCAACAAAACATGAATGGAGGAGCTCATGTTTTAGCACAGAAGATGAAGGAATTGGAGATGATGGAAGCAGGTGATGTTGAGCAAGTACTAGACATAGAAGAGGCACTCCACTACTATTCTCGCCTCACAAGTCCGGTTTACTTAGACATTGTGGACAAGTTTTTTGTGGACATGCACACAGAGTTCTCAGCTCCACAGCCCTCTGTCAGCATCAAACGCTCAAAGGGAAGACATGGCTCAATCAGGTTGTAG 3582 0.4104 MEANGGSKCDPKFPAFPFKPYSIQIDFMNALYHSLDQGGVSMLESPTGTGKTMSVICSALQWVLDRRRQQESVEAGRECGKNQENHGGSRSDDEPDWMRDFVVKKEMQVQPETISKKKEKYGSILGKLDKKNNREICKGFQGMGEDSPPEKGFKVLHNKIDEVHVDVIDKEFLLDEYESENEEALGNVRSKRKATKSVLTSSSEEDESDEEDEVEEKKLKVYFCSRTHSQLSQFIKELRKTVFVNEMDVVCLGSRKNLCINEEVRKLGNSTRINERCLELQKKKKNEPTKIKNLKACTRVQRTKTSSGCPMLRKHRLQREFRSELSQRGALDIEDLANLGRNLGTCPYYGSRSMVLRADLVVLPYQSLLSKSSREALGLNLKSNIVIIDEAHNLADSLISMYDSKITLSQLENVHSHLERYFEKFCNLLGPGNRRYIQILMVLTRVFLQVLISEKDASLVDSCQDIEKAFEESRASEYTMSINDFMFERNIDNVNLVKLVKYMKESNIVHKVCGYGEKVASLGKISTSNKFGEHCEEGSTQSAFQALADILLSLINNDSDGRIIISRSRPMNSWKQGGYIKYVMLSGEKIFSEIVDQAHAVLLVGGTLQPIEETRERLFPWLPPNQLQFFSCGHIVPPQSIMPIAVSRGPSGRSFDFSYCSRSSPDTMRELGLLLCNMVTVVPEGIVVFFSSFDYEGKVYEEWESSGILERITKRKRIFREPRNSTDIEFVLKEYKETVSTFSSTNLNENPASHGGAVLLAVVGGKISEGINLSDGMGRCIVMVGLPYPSPSDIELLERIKHIEGYRNSSSIETPRFSASHNVYSGDIKGGFDILRSCSHRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDVRYASDSSKRSFSHPINKLPQWIKDRFVSSTNNYGEVHRLLHQFFKFNKKEFDNPDAQIVKVVGAIDSWDKIEEYTSYSRLKLCQLLKEEPLGERFWLFTVESQMLLDDTIHKTKVFFHRTLRNFKSFFFGGYKRLPRSLSFNPFSCSSGYAGTYPRDQFYNVFYDQLQSDLSRITRVENNGLSRSKEPPAMEEASCTGNLMTFAKQSERKSIYEGRAKKKNKGNSQICKNGDLIQQNMNGGAHVLAQKMKELEMMEAGDVEQVLDIEEALHYYSRLTSPVYLDIVDKFFVDMHTEFSAPQPSVSIKRSKGRHGSIRL 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1672 1193 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 10 440 IPR014013 GO:0005524
Dere11g1672 1193 Coils Coil 174 194 - -
Dere11g1672 1193 Gene3D - 17 75 IPR027417 -
Dere11g1672 1193 Pfam Helicase C-terminal domain 675 891 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Dere11g1672 1193 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 15 921 IPR045028 -
Dere11g1672 1193 MobiDBLite consensus disorder prediction 73 96 - -
Dere11g1672 1193 SMART deadxpd 12 433 IPR006554 GO:0003678|GO:0016818
Dere11g1672 1193 NCBIfam DNA repair helicase (rad3) 183 909 IPR013020 GO:0003678
Dere11g1672 1193 SMART ultradead3 16 439 IPR014001 -
Dere11g1672 1193 Gene3D - 195 434 IPR027417 -
Dere11g1672 1193 SMART Cxpdneu3 693 880 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Dere11g1672 1193 CDD SF2_C_XPD 640 878 - -
Dere11g1672 1193 Gene3D - 653 893 IPR027417 -
Dere11g1672 1193 MobiDBLite consensus disorder prediction 184 211 - -
Dere11g1672 1193 Pfam DEAD_2 223 411 IPR010614 GO:0003677|GO:0003678|GO:0005524
Dere11g1672 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 407 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1672 Dere-ChrDere11 30386356 30394950 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1672 11 30386356 30394950 Dere11g1672 11 30386356 30394950 ECH