Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1525 ATGGAGACTAGCGAGAATAGTTGTTCTACTCAGCTTATTGATGGAGATGGTACATTTAATGTTACCGGAATTGAACAATTCATGAAGGAGGTGAAATTGAATGAATGTGGGCTTTCCTATGCCGTAGTTTCTATCATGGGTCCACAAAGTAGTGGCAAGAGCACACTATTAAATCATTTGTTCAGAACTAACTTCAGGGAGATGGATGCTTTTAAGGGAAGGTCTCAAACAACTAAAGGAATTTGGATGGCTAGATGTGCTGGCATAGAGCCTTGTACGATTGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGTGGAGAGGATGATACTGCATTTGAAAAGCAGAGTGCTCTATTTGCTCTTGCTGTTTCAGATATAGTGCTGATAAACATGTGGTGTCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCTCTTTTGAAAACTGTCTTTCAGGTCATGATGAGATTGTTTAGTCCGCGCAAAACAACATTGATGTTTGTCATACGTGATAAGACAAGGACACCCCTCGAAAATCTAGAACCTGTTTTGCGTGAGGATATCCAGAAGATATGGGACTCTGTTCCTAAGCCACAGGCTCACAAGGAAACCCCATTAAGTGAATTCTTCAATGTTGAAGTTGTTGCCCTTTCCAGTTATGAAGAAAAGGAAGAGCAATTTAAGGAGCAGGTTGCTGGCTTGAGGCAACGTTTCCATCATTCTATCGCTCCTGGTGGACTTGCAGGGGATAGACGTGGAGTAGTTCCTGCTTCCGGATTTTCTTTCAGTGCACAGCAAATTTGGAGAGTCATTAAGGAGAACAAAGACCTTGACCTTCCTGCTCATAAGGTTATGGTTGCTACTGTACGCTGTGAAGAAATTGCCAATGAAAAATATGCTGCGTTTACTGCAAATGAGGAATGGTGTCAGTTGGAAGATGCTGTGCAATCTGGCCCAGTTCCTGGATTTAGGAAAAAGCTCAGTTTAATCCTTGATAATTGTCTTTCAGAGTATGAGGCAGAAGCCACTTACTTTGATGAAGGTGTCAGATCTGCAAAACAAAAGCATCTTTTAGAAAAACTTTTGCAACTTGTCCAACCAGCATTCCAATCTGCGCTGGGACATATAAGGTCTGGAAGTTTTGAAAAATTTAAGGAAGCATTTGAGAAGGCTTTGAATGGAGGGGAAGGGTTTTCTGCTGCTGCTAAAAGATGCGTCGAGTCTTGTATATCTCAGTTTGATGAAGGATGTGCAGATGTTGTTATTGAAAAAGCAAACTGGGATACCTCTAAAGTGAGGGAGAAACTGCGGCGTGACACTGATGCACATGTTGCTTCTGTGCGTGCAGCTAAGCTGTCTGAATTAACTTCATCATATGAGGAAAAACTGAAGGAGGCCTTATCTGGACCTGTTGAAGCTCTTTTAGATGGAGCCAACAGTGATACTTGGCCATCAATAAGAAAACTTCTTAGGCGTGAAACTGAATCAGCTGTTTCAGGGTTCACTGCTGCACTTTCTGGGTATGATATGGATGAACAAACACAACAGAACATGATTATGAATTTAGAGAACTATGCAACAGGTGTGGTAGAAGCAAAGGCTAAGGAAGAAGCTGGAAGGGTTCTAATTCGTATGAAGGACAGGTTTATAACATTATTCAGCCGTGATTCTGATTCAATGCCTCGTATTTGGACGGGGAAGGAAGACATTCGAGCCATCACCAAGACTGCCCGCTCTTCTTCCTTGAAGTTGCTATCTGTTATGGCTGCAATTCGTTTGGATGATCAAGATGTTGATAATATTGAGAAAACATTGGTAGTTGCTTTGGTGGATTCATCAGGAAGTTCTCCTAAGGATAGGAGCATCACAGTTGTTGATCCACTGGCTTCAAGCACGTGGGAGCAGGTTCCATCCTCAAAAACATTGATTACACCTGTACAGTGCAAATCATTGTGGAGGCAATTTAAGATGGAGACGGAATATAATGTCTCTCAGGCCATAGCTGCACAGGAGGCCAACAAGCGTAATAACAACTGGTTACCTCCTCCATGGGCAATTGTTGCTTTGGTTGTTCTTGGATTTAATGAATTTATGACCCTTCTAAGAAATCCATTCTATTTGGGTGTCATCTTTGTTGGTTTTCTTCTTGTAAAAGCCCTATGGGTGCAGCTGGACATAGCTGGTGAATTTCGCCATGGAGCTCTTCCAGGACTTATATCCTTGTCGACCAAATTTCTTCCAACTGTTATGAACCTTATCAAAAGACTAGCAGAGGAGGCACAGAACCCTGCACCTAACCATTCAGAGAGAAACGCATCAGAAAGCAACAGCAATGTTGTTCCAGCTCGCAGCAATATGTCGTATAGCGCATCATCTAATGTAACTACATCAGAAAATGGGGCTGAATACTCTAGTCCATCAAAATATGAGTAG 2436 0.4228 METSENSCSTQLIDGDGTFNVTGIEQFMKEVKLNECGLSYAVVSIMGPQSSGKSTLLNHLFRTNFREMDAFKGRSQTTKGIWMARCAGIEPCTIVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSEFFNVEVVALSSYEEKEEQFKEQVAGLRQRFHHSIAPGGLAGDRRGVVPASGFSFSAQQIWRVIKENKDLDLPAHKVMVATVRCEEIANEKYAAFTANEEWCQLEDAVQSGPVPGFRKKLSLILDNCLSEYEAEATYFDEGVRSAKQKHLLEKLLQLVQPAFQSALGHIRSGSFEKFKEAFEKALNGGEGFSAAAKRCVESCISQFDEGCADVVIEKANWDTSKVREKLRRDTDAHVASVRAAKLSELTSSYEEKLKEALSGPVEALLDGANSDTWPSIRKLLRRETESAVSGFTAALSGYDMDEQTQQNMIMNLENYATGVVEAKAKEEAGRVLIRMKDRFITLFSRDSDSMPRIWTGKEDIRAITKTARSSSLKLLSVMAAIRLDDQDVDNIEKTLVVALVDSSGSSPKDRSITVVDPLASSTWEQVPSSKTLITPVQCKSLWRQFKMETEYNVSQAIAAQEANKRNNNWLPPPWAIVALVVLGFNEFMTLLRNPFYLGVIFVGFLLVKALWVQLDIAGEFRHGALPGLISLSTKFLPTVMNLIKRLAEEAQNPAPNHSERNASESNSNVVPARSNMSYSASSNVTTSENGAEYSSPSKYE 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1525 811 Hamap Protein SEY1 [SEY1]. 9 769 IPR008803 -
Dere11g1525 811 PANTHER PROTEIN SEY1 5 777 IPR008803 -
Dere11g1525 811 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 18 273 - -
Dere11g1525 811 Gene3D - 13 245 IPR027417 -
Dere11g1525 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 248 IPR027417 -
Dere11g1525 811 MobiDBLite consensus disorder prediction 765 811 - -
Dere11g1525 811 Coils Coil 218 238 - -
Dere11g1525 811 MobiDBLite consensus disorder prediction 762 811 - -
Dere11g1525 811 Pfam Sey1 three-helix bundle domain 323 760 IPR046758 -
Dere11g1525 811 CDD GBP 36 219 - -
Dere11g1525 811 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Dere11g1525 811 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1525 Dere-ChrDere11 28065667 28075696 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1429 12 26287182 26296413 Dere11g1525 11 28065667 28075696 CCT