Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1429 ATGACGGTCTCTACTATAGCTTTCTACACTAGCCCACCAAGCACTGTGTGTTCCTCGCCGCACCCTTGCCACATCAACACCCATGCATCTTGCGATTTTGAATTGGGTTCGCGATCTTCGTCGTCGTCGTCTTCTACGACGGCGTCCACATCTCAGAAGCCGGTTATGAGTGGCCTCTCTTGCTTATTCTCCTCGCCGACATTGAAGCACGCTCCGGTGTCGAGCTTTACTGGTGCCGGAGAGGAATTGGGTTCCTTGTCAGAATTAAAGGAATTGAGCAGCTCCTTCTCCTTTTCGCCGAGTAAATTTGCTGGGTCTTCTTGGAAAAGAGAGCAAAGCCCCGTTTCGGTATTCCAAGGTCCCGTTTCGTGTAGTAGCAGCAGCGTTTCTGGTTCCGCAAGAAGTCCCCCAATGAGGATCGGATGCGATAGCTCGATTCGATGTGGGAACAGTGGATTGTTGGATGGGTTTGTGAGAAATGCATTGGGGTCATGCTTGGATTACAATTCGCCAAGTTTCGAGGTGCGTGGTGGTGACTTGGATGTGGGTTCTTCTTCATCCTTAGCCGATGAATTGACCTTTAATTTGGAGGATGCTTTCGTGGAGGGAACTTTCGAGCCATACGCTAGAGAATTGCTTGTGGGTGCCCAGTTGAAGCACAAGATCTTTTGTGAAGAATTCGTTATCAAGGCTTTCTGCGAAGCCGAGAAAGCGCACAGAGGGCAGATGCGAGCTTCTGGTGATCCCTATTTGCAGCATTGTGTTGAAACTGCAGTTCTGCTTGCTTTGATTGGTGCCAATTCTACTGTTGTTGCTGCAGGCCTTTTGCATGACTCACTTGATGATTCATTTCTGACTTATGATTACATATTCGGGGCATTTGGCGCAGGAGTTGCTGATTTAGTTGAAGGGGTTTCTAAGCTAAGTCACTTGAGCAAGCTTGCCCGAGAGAATAATACTGCATGCAAGTCAGTTGAGGCAGATCGTCTGCATACCATGTTCCTTGCCATGGCCGATGCAAGAGCTGTCCTTATCAAATTGGCAGATCGATTACATAATATGATGACACTAGATGCATTGCCAGTGGCCAAGCAACAAAGATTTGCAAAGGAGACGTTGGAGATTTTTGCACCTTTGGCCAATCGATTGGGAATATCTAGTTGGAAGGAACAATTGGAGAACTTGTGTTTTAAGCATCTCAATCCAGACCAGCACGAGGAAATCTCATCAAAGCTTGTGGAGTCATATGATGATGCAATGATTACTTCTGCTATAGAGAAATTAGAGCAGGCACTTAAAGATGAAGGCATTTCTTATCATGTCCTTTCTGGGCGGCACAAGAGCTTGTACAGTATTTATTGCAAAATGCTGAAGAAGAAGCTAACCATGAATGACATCCATGATATCTATGGGCTGCGCTTGATTGTTCACAAGGAGGAGGACTGTTATAAAGCCTTGAGAGTTGTTCACCGGTTATGGTCTGAGGTACCTGGAAAGCTGAAAGACTACATTAGTCACCCCAAGTTTAATGGGTATAAATCTCTGCATACCGTAGTGATGGGTGAAGGCAAGGCTCCCCTTGAAGTACAAATCCGGACAAAAGAGATGCATCTCCAAGCAGAATTTGGATTTGCTGCTCACTGGAGATACAAGGAAGGTGACTGCCAGCATTCCTCATTTGTGCTTCAGATGGTTGAGTGGGCTCGATGGGTTGTCACTTGGCATTGTGAGACAATGAGTAAAGATTGTTCCTCTGTTGGATGTGCCGATTCAGTTAAGCCACCATGCAAGTTCCCTTCCCATGCTGATGATTGTCCATATTCTTACAAATCTCAATGTGGTCAGGATGGCCCAGTGTTTGTAATCCTGATCGAGAATGATAAGATGTCTGTTCAGGATTTTCCGGCAAACTCGACAGTAATGGACTTGTTGGAAAGAGCTGGGCGAGGAAGCTCTAAATGGACCCCTTATAGATTTCCGCTTAAAGAAGAACTAAGACCAAGGCTGAATTATTCGCCTGTGAGTGATCCCAAGTGTAAGCTGAATATGGGAGATGTGGTGGAGCTTACACCAGCCATACCTGACAAGTCTCTGACAGAGTATAGGGAAGAAATCCAGCGTATGTATAACAGAGGGCCAACTGTACCTGCTGCAAGTGGCATGGTTGGCTCAAGAAGCTGA 2181 0.4626 MTVSTIAFYTSPPSTVCSSPHPCHINTHASCDFELGSRSSSSSSSTTASTSQKPVMSGLSCLFSSPTLKHAPVSSFTGAGEELGSLSELKELSSSFSFSPSKFAGSSWKREQSPVSVFQGPVSCSSSSVSGSARSPPMRIGCDSSIRCGNSGLLDGFVRNALGSCLDYNSPSFEVRGGDLDVGSSSSLADELTFNLEDAFVEGTFEPYARELLVGAQLKHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCVETAVLLALIGANSTVVAAGLLHDSLDDSFLTYDYIFGAFGAGVADLVEGVSKLSHLSKLARENNTACKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHLNPDQHEEISSKLVESYDDAMITSAIEKLEQALKDEGISYHVLSGRHKSLYSIYCKMLKKKLTMNDIHDIYGLRLIVHKEEDCYKALRVVHRLWSEVPGKLKDYISHPKFNGYKSLHTVVMGEGKAPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVVTWHCETMSKDCSSVGCADSVKPPCKFPSHADDCPYSYKSQCGQDGPVFVILIENDKMSVQDFPANSTVMDLLERAGRGSSKWTPYRFPLKEELRPRLNYSPVSDPKCKLNMGDVVELTPAIPDKSLTEYREEIQRMYNRGPTVPAASGMVGSRS 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1429 726 Pfam Region found in RelA / SpoT proteins 444 553 IPR007685 GO:0015969
Dere11g1429 726 SUPERFAMILY Nucleotidyltransferase 391 580 IPR043519 -
Dere11g1429 726 CDD NT_Rel-Spo_like 424 542 IPR007685 GO:0015969
Dere11g1429 726 SMART hd_13 246 363 IPR003607 -
Dere11g1429 726 Pfam HD domain 235 385 - -
Dere11g1429 726 CDD HDc 248 376 IPR003607 -
Dere11g1429 726 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 94 696 - -
Dere11g1429 726 FunFam GTP pyrophosphokinase RelA 402 534 - -
Dere11g1429 726 FunFam GTP pyrophosphokinase RelA 211 401 - -
Dere11g1429 726 Gene3D Hypothetical protein af1432 216 401 - -
Dere11g1429 726 SMART RelA_SpoT_2 444 554 IPR007685 GO:0015969
Dere11g1429 726 SUPERFAMILY HD-domain/PDEase-like 211 401 - -
Dere11g1429 726 ProSiteProfiles HD domain profile. 250 354 IPR006674 -
Dere11g1429 726 Gene3D Beta Polymerase, domain 2 404 534 IPR043519 -
Dere11g1429 726 ProSiteProfiles S4 RNA-binding domain profile. 668 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1429 Dere-ChrDere11 26319056 26322694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1429 251 553 EF-hand Containing Proteins AT3G17470 29.129 2.90e-37 143
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1429 11 26319056 26322694 Dere11g1429 11 26319056 26322694 ECH