Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1403 ATGCCTGGGAATGAGGCTTGTCTGAACATGCGCAAACCTGGAGAGGAAGTTGTTTATATCCGAACCAATAGTTTGAAGCTTGATGTCATGTTTGTGAAACAAAAAAAAAAGAATCAAGGGATCGAATCATCAATCGGTAATTCCCGTGCTGAAAGACCTCTAGGCTCTAAGCTTCTTCACTCTGATGCACAGCAATTTGCGTCAGAGGTAGTGATCCAAAGGCTTCGTGACGACGCTGCAATGGACGTGGAAATGGTGACTTCTCCGAGCTATGCCGACCCAGAAGATCTCACCGTCAGGGAGCAGTTTCGTAGATACAGGAAGAGACACTCGATTTCAAGCACTTCAGTCCAGAAAGAAAGGGCAGCTCCTAAAGAAGCTGGGCTGTTGTATGACGGCCAAAGCATTCACAGTCCTACTAATGCAGCACTTCTCCTTGAAAATATTAAAGAAGAGGCTGAGAGTCTTGATGCTGATTATTCAGAAGTTACACCTGCAAAGACACAATATTCCACGAGAAAGTGGTTCTCTGTTGATACTCATGGAGTCCCTGATGTGGGTACTGGTTTTGACACTACACGCCACTCACTGAAGACTTCTAAGCAAGAAGGTGACTCATTGGGAGATGGAGCAGACACAATTTTTACTTTATTTGCTTCTCTGCTTGATTCTGCTCTTCAAGGGCTGATGTCTATTCCGGATCTGATACTAAGGTTTGAGACAGAATGCCGAAATGTTTCAGAATCTATCAGGTATGCTTTAAATATAAGGCATCGAGTGGTGGAGGACAAATTGATAAGGCAGAAGGCTCAGCTCTTGCTTGATGAGGCTGCGACCTGGTCTCTCCTGTGGTACCTTTATGGGAAAGTGACTGAAGAACTACCTAAAAAGCTAATACTGGTGCCAGGAACCTCTCATTTGGCAGCTTGTGAGTTTGTTGCTGAGGACCATATGGCTCAGTTATGTCTCCGGATAGTCTGTTGGTTAGAAGGTTTAGCTTCTAAAACACTTGACTTGGAAGGCAAGGTGTATGGATCTCATGTTGGCACTTATCTCCCCACTTCTGGAGTTTGGCATCATACTCAGCATCACCTAAAGAAGGGAACTTCTGACATTAACACTGTTCATCACTTGGATTTTGATGCTCCAACTCGTGAAAATGCAAATATTTTGCCTGATGACAAAGTACTTCACATTTATATAATATCTTGTGTATCATATGTTGGTAGTGAGGCTTTTGGAAAGGGTAGGAGAGGAAGCCATTATGAGATGGTGCTTATATTATGGCAATCTGAGGATAATAAAATAGATGAGTTAGATGCGTATGCACACCCTATATACTATGAAGTGTCAGTAACAGTTGTTCTGGTGCAGAAACAAGATGAATCTCTTTTAGAAGATGTGTGGACTCTATTGAGGGCCGGAAAACTAGAAGAGGCATGTGAACTTTGCCGATCTGCTGGACAGCCATGGAGAGCTGCTACTTTATGCCCATTTGGAGGATTAAACCAATGTCCTTCTGTTGAAGCTCTGGTGAAGAATGGTAAAAGTAGAACTCTGCAGGCCATTGAATTTGAAAGTGGCATTAGTCATCAATGGCATCTCTGGAAATGGGCTTCATATTGTGCATCAGAGAAAATAGCAGAACTAGGTGGAAAGTATGAAGCAGCTGTGTATGCAGCCCAATGTAGCAACTTAAAGCGGATGCTTCCACTCTGCACAGACTGGGAGACAGCATGCTGGGCAATGGCAAAGTCTTGGCTGGATGTTCAGGTGGACTTGGAAGTCATTCGCTTGGGGGCAAGGGGAGTTGATCAGCTTAAAAATGCTGTAGATGCAATTGAAGGAAGTCCTGGATGTGGAGATAGTTCCTTTGAGCCTTTGGATGGTCCTGAAAATTGGCCATTTCAAGTTTTGAAACAGCAACCACGACAAATTTCATCCCTTCTTCAGAAACTTCATTCAGGCGAAATGGTTCATGAAACTGTTACTCGACAATGTAAGGATCGCCATCATCAGATTGAGATGACTTTAATGGTAGCGGACATACCACATCTGCTGGACCTTATATGGTCGTGGATAGCACCTTCAGATGATGATCAAAATGTATTTAGGCCTCATGGAGATCCTCAAATGATTCGATTTGGCACACATCTAGTGCTTGTGTTTAGATACTTAATGGCTGATGAAATGACTGATGCCTTCAGAGACAAAATTCTCAATGTTGGTGACCTCATTCTGCATATGTATGCAATGTTTCTCTTTTCAAAGCATCATGAGGAGTTAGCGGGGATATATGCTTCTCATCTTGCACGTCATCGTTGTATCGACCTCTTTGTGCACATGATGGAACTAAGGTTGAACAGCAGCGTACATGTGAAGTACAAGATATTCCTTTCTGCTATAGAGTATTTACCATTTTCTCCTGGGGACGATTCTAAGGGCAGTTTCTTAGAAATTATTGAGAGAATTTTGCTTAGATCTCGAGAAATAAAGGTTGGTAAATATGATAAGCTATCAGATGTTGCAGAACAGCACAGACTACAGAGTCTTCAAAAAGCTAAGGTCATACAGTGGCTTTGCTTTACACCACCATCCACAATTACTAATGTTAAAGATGTTAGTAAAAACCTCCTTCTCCAAGCATTAGTACATAGCAATATACTCTTGAGGGAGTTTGCTCTAATTTCGATGTGGAGGGTCCCAGCAATGCCCATAGGTGCCCACACAGTACTTAGTTTTCTTGCTGAACCCTTGAAACAGCTTTCAGAAACTCTTGATGCCTCTGTTGGTTATGTTGCAGAGGATCTGAGAGAGTTCCAAGACTGGAGTGAGTATCACTCCTGTGATGCAACCTATCGCAATTGGCTGAAAATTCAATTAGAGAATGCAGAAGTTCCTGTCCCTGAACTCTCACTTGAGGAAAAAGAAAGGGCCATTTCAAAGGCCAAAGAAACACTGAAAGCATCTCTTACACTCCTAGAAAGAAAAGAAACATCTTGGTTGACTTTCATTGATGATCATATCAATGAGTCAGCTGAACCAGTTTTTCTTGAACTTCATGCCACTGCAATGCTCTGCCTGCCATCTGGAGAGTGCTTGTGTCCTAATGCCACTATATGCACAACACTGATGAGTGCACTCTACTCTTCAGTAGGTGATGAAGTTGTCTTAAGTCGACAGCTAAAGGTGGATGTCTCTATATCATCAAGGGATAACTACTGCATTGAGGTCGTTCTTCGTTGCTTAGCAGTAGCAGGTGATGGACTTGGGCCACATGAACTTAATGATGGTGGCATTCTTGGCAGCATTATGGCTGCGGGCTTCAAAGGTGAGCTTCCCAGGTTCCAAGCTGGAGTTACAATGGAGATATCACGATTGGATGCTTGGTATTCTGACAAAGATGGTACTTTAGAGTGCCCAGCAACATACATTGTGAAGGGCCTTTGTCGTAGGTGCTGTCTCCCTGAACTCATTCTTCGTTGCATGCAAGTCTTGGTTTTTCTCGCGGAATCGGGTGTCCTTCCAGTTTGTCATGAAACATTGATTGAGCTGGTTGGCAGCCCAGAGACAGACTTTCTTCACTTGTTTAGTCAACAACAACTGCAGGAATTTCTGTTGTTTGAACGGGAGTACGCAATCTACAAAATGGAGCTTATCCAAGAATGA 3669 0.4301 MPGNEACLNMRKPGEEVVYIRTNSLKLDVMFVKQKKKNQGIESSIGNSRAERPLGSKLLHSDAQQFASEVVIQRLRDDAAMDVEMVTSPSYADPEDLTVREQFRRYRKRHSISSTSVQKERAAPKEAGLLYDGQSIHSPTNAALLLENIKEEAESLDADYSEVTPAKTQYSTRKWFSVDTHGVPDVGTGFDTTRHSLKTSKQEGDSLGDGADTIFTLFASLLDSALQGLMSIPDLILRFETECRNVSESIRYALNIRHRVVEDKLIRQKAQLLLDEAATWSLLWYLYGKVTEELPKKLILVPGTSHLAACEFVAEDHMAQLCLRIVCWLEGLASKTLDLEGKVYGSHVGTYLPTSGVWHHTQHHLKKGTSDINTVHHLDFDAPTRENANILPDDKVLHIYIISCVSYVGSEAFGKGRRGSHYEMVLILWQSEDNKIDELDAYAHPIYYEVSVTVVLVQKQDESLLEDVWTLLRAGKLEEACELCRSAGQPWRAATLCPFGGLNQCPSVEALVKNGKSRTLQAIEFESGISHQWHLWKWASYCASEKIAELGGKYEAAVYAAQCSNLKRMLPLCTDWETACWAMAKSWLDVQVDLEVIRLGARGVDQLKNAVDAIEGSPGCGDSSFEPLDGPENWPFQVLKQQPRQISSLLQKLHSGEMVHETVTRQCKDRHHQIEMTLMVADIPHLLDLIWSWIAPSDDDQNVFRPHGDPQMIRFGTHLVLVFRYLMADEMTDAFRDKILNVGDLILHMYAMFLFSKHHEELAGIYASHLARHRCIDLFVHMMELRLNSSVHVKYKIFLSAIEYLPFSPGDDSKGSFLEIIERILLRSREIKVGKYDKLSDVAEQHRLQSLQKAKVIQWLCFTPPSTITNVKDVSKNLLLQALVHSNILLREFALISMWRVPAMPIGAHTVLSFLAEPLKQLSETLDASVGYVAEDLREFQDWSEYHSCDATYRNWLKIQLENAEVPVPELSLEEKERAISKAKETLKASLTLLERKETSWLTFIDDHINESAEPVFLELHATAMLCLPSGECLCPNATICTTLMSALYSSVGDEVVLSRQLKVDVSISSRDNYCIEVVLRCLAVAGDGLGPHELNDGGILGSIMAAGFKGELPRFQAGVTMEISRLDAWYSDKDGTLECPATYIVKGLCRRCCLPELILRCMQVLVFLAESGVLPVCHETLIELVGSPETDFLHLFSQQQLQEFLLFEREYAIYKMELIQE 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1403 1222 Pfam Nuclear pore protein 84 / 107 459 1008 IPR007252 GO:0005643|GO:0017056
Dere11g1403 1222 Pfam Nuclear pore protein 84 / 107 273 395 IPR007252 GO:0005643|GO:0017056
Dere11g1403 1222 PANTHER NUP107-RELATED 90 1219 IPR007252 GO:0005643|GO:0017056
Dere11g1403 1222 Gene3D - 453 570 - -
Dere11g1403 1222 Gene3D - 842 1025 - -
Dere11g1403 1222 FunFam Nuclear pore complex protein 841 1008 - -
Dere11g1403 1222 Coils Coil 973 993 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1403 Dere-ChrDere11 25948197 25969225 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1403 11 25948197 25969225 Dere11g1403 11 25948197 25969225 ECH