Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1348 ATGGCGGAGAAGTCATGCGTCAAGCGCCTTCAGAAGGAATATAGAGCTCTTTGTAAAGAGCCAGTGTCCCATGTTGTTGGTCGTCCATCACCTAATGATATACTTGAGTGGTATTATGTGTTGGAAGGAAGCGAAGGAACACCTTTTGCAGGTGGATATTACTATGGGAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGCATGACAACACCTAACGGACGCTTCATGACACAGAAAAAGATCTGCTTGTCCATGAGTGATTTTCATCCAGAAAGTTGGAATCCTATGTGGTCGGTATCAAGCATACTTACAGGGCTTCTTTCATTCATGATGGACAGCAGTCCAACTACTGGCAGTGTGAACACTACTACTGCTGAGAAGCAGCGTCTTGCGAAAGCTTCCCTTGCTTTCAATTGCAAGAATGCAACATTCAGGAAAATGTTCCCCGAGTATGTCGATAAATACAACCAGCAGCTTTCTGAGCAAATTGCATCAGAGACGGCATCTCATGACAAAAATTCTAAGCCCGTGTTGAGAAAGGTTTCAGAGTCTACAGGAGAAGACATGAAAGTAGTAGATGAGTTGAAAGAGTTGAGGAAAAACAAAAAGCAATCTTTTCCCACATGGATGATGTTGTTGCTCTTCTCCATCTTTGGGGTTGTAATGGCATTGCCTCTGCTTCAGCTGTGA 705 0.4312 MAEKSCVKRLQKEYRALCKEPVSHVVGRPSPNDILEWYYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDSSPTTGSVNTTTAEKQRLAKASLAFNCKNATFRKMFPEYVDKYNQQLSEQIASETASHDKNSKPVLRKVSESTGEDMKVVDELKELRKNKKQSFPTWMMLLLFSIFGVVMALPLLQL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1348 234 Gene3D Ubiquitin Conjugating Enzyme 1 179 IPR016135 -
Dere11g1348 234 SMART ubc_7 8 162 - -
Dere11g1348 234 FunFam Ubiquitin-conjugating enzyme E2 34 1 178 - -
Dere11g1348 234 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 137 - -
Dere11g1348 234 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 162 IPR000608 -
Dere11g1348 234 Pfam Ubiquitin-conjugating enzyme 9 131 IPR000608 -
Dere11g1348 234 CDD UBCc 7 157 IPR000608 -
Dere11g1348 234 SUPERFAMILY UBC-like 5 156 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1348 Dere-ChrDere11 25290259 25293045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1348 1 234 Miscellaneous Gene Families AT1G17280 76.793 4.04e-135 377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1348 11 25290259 25293045 Dere11g1348 11 25290259 25293045 ECH