Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1262 ATGTCTTTTTCTGCAACTAAGCTCGTGCAACCCCTTTCTCTCAATTCCGCCACTTCCAGATCCAATGATAAGCTTAATCCTATGTCTTTTGATCCCTTCAGGACTAGCTCCTCTTTCCTTGGATCCACGCACAAGCTTCGCTTCAATGCTCTCAGTAAGATTTCTCAGCACAATGTCCATCGTCGAGCCGCTGTTGTTGCTGTTTCCGATGTTGTCAAGGAAAAGAAGCCCAAATCAAGCGCCAATCTGCTTATTACAAAAGAGGAAGGCCTGGAGCTATACGAAGACATGGTATTAGGCAGGGCCTTTGAAGACATGTGTGCCCAGATGTATTATAGAGGCAAAATGTTTGGTTTTGTCCACTTGTATAATGGGCAAGAAGCTGTGTCAACCGGATTCATCAAACTTCTGAAGAAAGAAGATTATGTGGTAAGCACCTACCGGGACCATGTTCATGCACTGAGCAAGGGAGTCCCAGCTCGTGCTGTAATGAGTGAGCTCTTTGGAAAGGCTACTGGATGCTGCCGAGGTCAAGGTGGTTCAATGCATATGTTCTCAAAAGAACACAATCTGCTTGGTGGGTTTGCATTCATTGGTGAAGGGATTCCAGTAGCCACTGGAGCAGCATTTTCCAGTAAGTATAGAAGGGAGGTATTGAAAGAGGCAGATGCTGATAATGTCACCTTGGCTTTTTTTGGAGATGGGACTTGTAATAATGGGCAATTCTTTGAATGCCTAAACATGGCAGCATTGTGGAAATTACCAATTGTGTTTGTCGTGGAAAACAATTTGTGGGCTATTGGGATGTCACATCTCAGGGCAACTTCAGATCCTGAGATATGGAAGAAAGGGCCAGCATTTGGAATGCCAGGGGTTCATGTAGATGGAATGGATGTTTTGAAGGTCAGGGAGGTGGCAAAGGAGGCGATTGAAAGAGCTAGAAGAGGCGAGGGACCAACTCTAGTGGAATGTGAGACCTATAGATTTAGAGGACATTCATTGGCTGATCCTGATGAGCTTCGTGACCCTGCTGAGAAGGCACACTATGCTGGTAGGGATCCGATCTCTGCACTGAAGAAATACTTGATTGAGAACAAATTAGCGAGTGAGCAGGAGTTGAAGGCCATAGAGAAAAAGATTGATGAGGTGATTGAGGACTCTGTTGAGTTTGCTGATGAGAGCCCTCTTCCACCTCGCAGCCAGCTTTTGGAGAATGTGTTTGCTGACCCAAAGGGTTTTGGAATTGGACCAGATGGAAGGTATAGATGTGAGGATCCAAAATTCACTGAAGGCACTGCTCACGTTTAG 1308 0.4557 MSFSATKLVQPLSLNSATSRSNDKLNPMSFDPFRTSSSFLGSTHKLRFNALSKISQHNVHRRAAVVAVSDVVKEKKPKSSANLLITKEEGLELYEDMVLGRAFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDYVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEADADNVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAHYAGRDPISALKKYLIENKLASEQELKAIEKKIDEVIEDSVEFADESPLPPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1262 435 FunFam Pyruvate dehydrogenase E1 component subunit alpha 52 416 - -
Dere11g1262 435 CDD TPP_E1_PDC_ADC_BCADC 93 391 - -
Dere11g1262 435 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 80 410 IPR029061 -
Dere11g1262 435 Gene3D - 44 416 - -
Dere11g1262 435 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 64 418 - -
Dere11g1262 435 Pfam Dehydrogenase E1 component 96 397 IPR001017 GO:0016624
Dere11g1262 435 NCBIfam pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 87 408 IPR017597 GO:0004739|GO:0006086|GO:0043231
Dere11g1262 435 Coils Coil 366 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1262 Dere-ChrDere11 24009471 24012293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1262 2 435 Acyl Lipid Metabolism Gene Families AT1G01090 80.876 0.0 721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1262 11 24009471 24012293 Dere11g1262 11 24009471 24012293 ECH