Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1261 ATGACTTTGGTCTTTGTGGCAACTGAGGTTGGTCCATGGAGCAAAACTGGTGGGCTTGGAGATGTTCTTGGAGGTCTCCCACCAGCATTGGCAGCTAATGGGCATCGAGTTATGACCATATCTCCCCGTTATGACCAGTACAAAGATGCATGGGATACAGAAGTTATAGTTGAGGTAAAAGTAAGAGACAAAGTGGAAAAAGTTCGCTTCTTCCATTGCTACAAAAGAGGAGTTGATCGTGTCTTTGTTGATCATCCTATGTTCCTTGAGAAGGTGTGGGGAAAAAGTGGAACCAAACTGTATGGTCCAAGTGCAGGAGAGGATTATGTTGACAACCAACTCCGGTTCAGCTTGTTCTGCCAGGCAGCTTTGGAAGCACCAAGGGTTCTGAATCTGAACAGCAGTGCTTATTTCTCTGGACCATATGGTGAAGATGTCATTTTCATTGCCAATGATTGGCACACTGCCCTTCTTCCCTGCTACTTAAAATCTATGTATCAGCCATTTGGAATCTATAAGAATGCCCGTGTTGCTTTCTGTATCCACAACATAGCTTACCAAGGCAGATTTGCATTCGGCGACTTTTCACTTCTCAATCTCCCTGATCAATTCAGAAGCTCATTTGACTTCATTGATGGGCATGCTAAACCAGTAATAGGAAGGAAAATAAATTGGATGAAAGCTGGAATTATAGAATCAAACCTGGTGTTAACAGTTAGTCCATATTACGCTGAAGAACTTATTTCTGGCGCTGATAAAGGAGTGGAGTTGGACAACATCGTTCGCAGAACTAAAATTATTGGAATTGTCAATGGCATGGATGTCCAGGAGTGGAATCCATCCACTGACAAATACATAGATGTCAAATACAATGCTTCAACAGTATTGACAGCAAAGCCTCTTCTTAAAGAAGCTCTCCAAGCAGAAGTTGGATTGCCGGTAGACAGAAATGTTCCTCTTATTGGTTTCATTGGTAGGCTTGAAGAGCAGAAAGGCTCTGATATTCTTGTAGAAGCCATTCCCAAATTTATTGAAGAGGATGTTCAGATAGTGGCCCTTGGAACAGGTAAGAAACAAATGGAAAAGCAACTTCAGCAGCTGGAGACATTATACCCTGACAAGGCCAGAGGAGTAGCAAAATTCAATGTTCCCTTAGCCCATATGATAATAGCTGGTGCTGATTATATATTAGTTCCTAGCAGATTTGAACCTTGTGGGCTCATACAGTTGCAAGCCATGCGCTATGGAACTGTACCTATAGTTGCCTCAACTGGTGGATTAGTGGACACAGTCAAAGAAGGTTTCACAGGATTCCAGATGGGTGCCTTCAATGTTGAATGTGAAGCCGTTGATCCGGAAGATGTCATTGCTCTGGCTAACAACGTTAAAAGGGCCCTTAGAGTTTATGGAACTCCAGCTCTTGCAGAAATGATCAAGAATTGCATGGCTCAAGATCTTTCATGGAAGGGACCTGCTAAGAAGTGGGAGGATATATTGCTTAGCTTGGGAGTTGCTGGAAGTGAACCTGGGATTAATGGTGAAGAAATTGCTCCACAAGCAAAGGAAAACGTAGCAACTCCTTAA 1584 0.4287 MTLVFVATEVGPWSKTGGLGDVLGGLPPALAANGHRVMTISPRYDQYKDAWDTEVIVEVKVRDKVEKVRFFHCYKRGVDRVFVDHPMFLEKVWGKSGTKLYGPSAGEDYVDNQLRFSLFCQAALEAPRVLNLNSSAYFSGPYGEDVIFIANDWHTALLPCYLKSMYQPFGIYKNARVAFCIHNIAYQGRFAFGDFSLLNLPDQFRSSFDFIDGHAKPVIGRKINWMKAGIIESNLVLTVSPYYAEELISGADKGVELDNIVRRTKIIGIVNGMDVQEWNPSTDKYIDVKYNASTVLTAKPLLKEALQAEVGLPVDRNVPLIGFIGRLEEQKGSDILVEAIPKFIEEDVQIVALGTGKKQMEKQLQQLETLYPDKARGVAKFNVPLAHMIIAGADYILVPSRFEPCGLIQLQAMRYGTVPIVASTGGLVDTVKEGFTGFQMGAFNVECEAVDPEDVIALANNVKRALRVYGTPALAEMIKNCMAQDLSWKGPAKKWEDILLSLGVAGSEPGINGEEIAPQAKENVATP 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1261 527 NCBIfam glycogen/starch synthase, ADP-glucose type 1 500 IPR011835 GO:0004373
Dere11g1261 527 Gene3D Glycogen Phosphorylase B; 274 484 - -
Dere11g1261 527 FunFam Starch synthase, chloroplastic/amyloplastic 2 278 - -
Dere11g1261 527 Pfam Glycosyl transferases group 1 316 440 IPR001296 GO:0016757
Dere11g1261 527 CDD GT5_Glycogen_synthase_DULL1-like 4 501 - -
Dere11g1261 527 Gene3D Glycogen Phosphorylase B; 3 493 - -
Dere11g1261 527 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 1 506 - -
Dere11g1261 527 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 4 501 - -
Dere11g1261 527 Hamap Glycogen synthase [glgA]. 1 502 IPR011835 GO:0004373
Dere11g1261 527 FunFam Starch synthase, chloroplastic/amyloplastic 279 484 - -
Dere11g1261 527 Pfam Starch synthase catalytic domain 4 262 IPR013534 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1261 Dere-ChrDere11 23988068 23991300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1261 1 527 Glycosyltransferase AT1G32900 76.850 0.0 840
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1261 11 23988068 23991300 Dere11g1261 11 23988068 23991300 ECH