Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1207 ATGCCGGGTCTAGTTGCCGCGAAAACCCCTCCTCAGACGACGCCGTTAGACGTCTCCGTTACCGATTATTCCAATGGCGGCGAACACAGAACCCCATCGCCGCTCGTGAAGCGAACCCCCAAGAAGGCACAGGAAAAGTTGATCACAGACGATTCCTCCCTCGACAACCCGGATCTTGGTCCCTTTCTCCTGAAGCTAGCCCGAGACACAATAGCTTCGGGCGAGAACCCGAACAAGGCACTGGACTATGCGATCCGGGCGTCCAAATCGTTAGAGCGATGCTCGGGTCCGGGCCTGGAGCTTGCCATGTGCTTGCACGTTGTCGCGGCGATCTACAGCAGTTTGGGGCGGTTCGGTGAGGCGATTCACGAGCTGGAGCGGTCCATTGAGTTTCCGGATCTTTCGAAAGGGTCGGATCACGCCATGGCAAAGTTTTCGGGGTACATGCAGTTAGGGGATACGTATTCGATGATCGGGCAGCTGCAACGGTCAATTAAGTGTTACGGGTCGGGTTTGGAGATCCAAATGAAGGCTCTTGGAAAGTCCGACCGGAGAGTCGGAGAGACTTGCAGGTACTTAGCTGAAGCCCATGTTCAAGCTATGCAATTTGATGAGGCAGAGAACTTCTGCAAGAAGGCTCTTGAAATTCACAGGGAGCATAGTTCCCCAGCTTCCCTTCCAGAAGCAGCTGATCGGCGCCTTATGGCCCTCATATGTGAGGCAAAGGGAGATTATGAATCAGCACTCGAGCACCTTGTCCTAGCCAGCGTGTCCATGATTGCTAATGGGCAAGACAATGAGGTTGCAGCTATTGATGTTAGCATTGGCGACATTTACTTGTCACTCTGTCGTTTTGATGAGGCTGTCTTTGCCTACCAGAAAGCTCTCACAGTGTTCAAATCCACCAAGAGTGAGAATCACGGTTCTGTGGCAGTAGTGTACATTCGCCTTGCTGACCTATACTACAAGACAGGCAAATTACGAGAGTCGAATTCTTACTGTGAAAATGCCTTGAGAATATACACCAAACCTGACCCTGGAACCACCCCTGAAGAGATTGCTGGTGGGTTAACCGAAATCTCTGCCATCTATGAAGCTCTGAATGAGCCTGAGGAGGCACTGAAGCTCTTGCAGAAGGCAATGAAGTTATTGGAGGATAACCCCGGACAGTTTAGGACAATAGCAGGAATTGAAGCACAAATGGCTGTGATTTTCTACATGGTTGGGCGGTGCATGGAGGCTCGGAACTCTTTTGAGAGTGCTATCACTAAGCTGAGGGCTAGTGGGGAGAGGAAATCTGCCTTTTTTGGAGTTTTATTGAACCAGATGGGCCTGGCTTGTGTGCAACTGTACAAAATAGGGGAGGCAGCCAAACTTTTTGAAGAAGCAAGAGAGATATTGGAGGAGGAGTGTGGAACATACCATTTGGACACTCTAGGAGTGTATAGCAATCTTGCAGCAACTTATGATGCCATGGGGAGGGTTGATGATGCCATTGAGATATTGGAGCAAATATTAAAGATGAGAGAAGAAAAGCTTGGAACGGCAAATCCGGACGTTGATGATGAAAGGAAAAGACTATATGAGCTTTTGAAAGAAGCAGGAAGAGTCCGGAACAAAAAGGGAAAGTCACTCGAAAATCTTATAGACTCCAATTTTCTAAAGATGAAGAAGGAAGGAAGAAAGCGATGTTCTGCATTTGGTTTGAGAACTTAA 1716 0.4883 MPGLVAAKTPPQTTPLDVSVTDYSNGGEHRTPSPLVKRTPKKAQEKLITDDSSLDNPDLGPFLLKLARDTIASGENPNKALDYAIRASKSLERCSGPGLELAMCLHVVAAIYSSLGRFGEAIHELERSIEFPDLSKGSDHAMAKFSGYMQLGDTYSMIGQLQRSIKCYGSGLEIQMKALGKSDRRVGETCRYLAEAHVQAMQFDEAENFCKKALEIHREHSSPASLPEAADRRLMALICEAKGDYESALEHLVLASVSMIANGQDNEVAAIDVSIGDIYLSLCRFDEAVFAYQKALTVFKSTKSENHGSVAVVYIRLADLYYKTGKLRESNSYCENALRIYTKPDPGTTPEEIAGGLTEISAIYEALNEPEEALKLLQKAMKLLEDNPGQFRTIAGIEAQMAVIFYMVGRCMEARNSFESAITKLRASGERKSAFFGVLLNQMGLACVQLYKIGEAAKLFEEAREILEEECGTYHLDTLGVYSNLAATYDAMGRVDDAIEILEQILKMREEKLGTANPDVDDERKRLYELLKEAGRVRNKKGKSLENLIDSNFLKMKKEGRKRCSAFGLRT 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1207 571 ProSiteProfiles TPR repeat profile. 269 302 IPR019734 GO:0005515
Dere11g1207 571 SMART tpr_5 187 220 IPR019734 GO:0005515
Dere11g1207 571 SMART tpr_5 229 262 IPR019734 GO:0005515
Dere11g1207 571 SMART tpr_5 311 344 IPR019734 GO:0005515
Dere11g1207 571 SMART tpr_5 269 302 IPR019734 GO:0005515
Dere11g1207 571 SMART tpr_5 102 135 IPR019734 GO:0005515
Dere11g1207 571 SMART tpr_5 145 178 IPR019734 GO:0005515
Dere11g1207 571 SMART tpr_5 395 428 IPR019734 GO:0005515
Dere11g1207 571 SMART tpr_5 354 387 IPR019734 GO:0005515
Dere11g1207 571 SMART tpr_5 479 512 IPR019734 GO:0005515
Dere11g1207 571 SMART tpr_5 437 470 IPR019734 GO:0005515
Dere11g1207 571 Coils Coil 367 387 - -
Dere11g1207 571 ProSiteProfiles TPR repeat profile. 354 387 IPR019734 GO:0005515
Dere11g1207 571 MobiDBLite consensus disorder prediction 1 39 - -
Dere11g1207 571 ProSiteProfiles TPR repeat profile. 479 512 IPR019734 GO:0005515
Dere11g1207 571 Pfam Tetratricopeptide repeat 268 343 - -
Dere11g1207 571 Pfam Tetratricopeptide repeat 439 511 - -
Dere11g1207 571 Gene3D Tetratricopeptide repeat domain 41 256 IPR011990 GO:0005515
Dere11g1207 571 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 29 552 - -
Dere11g1207 571 Gene3D Tetratricopeptide repeat domain 433 546 IPR011990 GO:0005515
Dere11g1207 571 SUPERFAMILY TPR-like 89 515 IPR011990 GO:0005515
Dere11g1207 571 MobiDBLite consensus disorder prediction 12 28 - -
Dere11g1207 571 Pfam MalT-like TPR region 111 252 IPR041617 -
Dere11g1207 571 Gene3D Tetratricopeptide repeat domain 257 432 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1207 Dere-ChrDere11 23181348 23185277 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1207 11 23181348 23185277 Dere11g1207 11 23181348 23185277 ECH