Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0932 ATGTATGGATGGCAACATATGATGAAGCACCGAAGCGCCAAGCGAATTGCGAAGGCAGCAGATATTAAACTCCTTGGATCCCTTAACAGAGATGATTTAAGGAAAATCTGTGGTGATAATTTTCCTGAATGGATATCTTTTCCTGTCTACGAACAGGTGAAATGGCTGAACAAGCAGCTGACCAAACTGTGGCCATTTGTGGCACAAGCAGGATCAATGGTGATCAAAGAGTCTGTTGAGCCACTGCTTGAGGAGTACAGACCTCCTGGAATTACTTCATTGAAGTTCAGCAAGCTGTCACTCGGAAATGTTGCTCCGAAGATTGAAGGTATTCGTGTTCAGAGTCTTAACAAAGGTCAAATCATTATGGACATTGATTTCCGATGGGGAGGTGATCCCAGCATCATATTGGCTGTTGAAGCTGCACTTGTTGCGTCAATACCCATTCAGTTGAAGGATCTCCAAGTTTTCACCATTGTCCGTGTCATCTTCCAACTTGCTGAAGAAATACCATGCATTTCTGCTGTTGTTGTTGCCCTACTTGCTGAGCCAAAACCAAGGATTGATTACACTCTGAAGGCCGTTGGTGGAAGTTTGACAGCAATTCCTGGACTATCAGATATGATTGATGATACTGTGAACTCAATAGTTACTGATACGCTCCAATGGCCTCATAGGATCGTTGTTCCAATTGGTGGTATACCTGTTGATACTAGTGAACTGGAGCTTAAACCACAGGGAAAGCTTACAGTAACAGTAGTGAAAGCCAATGATTTGAAGAATAAGGAAATGATTGGGAAGTCTGATCCTTATGTAGTTGTGTATATTCGACCCCTATTTAAGGTTAAAACCAAGGTTATTGAGAACAACCTGAATCCTGTTTGGGATCAGACATTTGACTTGATTGCTGAAGACAAGGAGACTCAGTCACTCATTCTTGAGGTTTATGATAAAGATATTGGGCAAGATAAGCGATTGGGAATAGTAAAATTACCTCTTATTGATCTGGAAGTAGAAACTGTAAAGGAATTTGAGTTGAGGCTGCTGTCATCGCTTGACACACTGAAGGTAAAAGATAAGAAGGACCGAGGATCATTGACTATAAAGGCTTTGTACCATCAATTTAGCAAGGAAGAGCAGTTGGATGCTCTAGAAGCAGAGAAGAAGATACTTGAAGAAAGGAAGAAGCTGAAAGAGGCAGGAGTGATAGGAAGCACTATGGATGCAATAGATGGAGCAGCATCACTTGTTGGGTCTGGTGTTGGATTGGTTGGTAGCGGTGTTGCTGCTGGTGCTGGGCTTGTGGGAAGTGGCATTGGTGCGGGAGCTGGGCTTGTTGGCAGTGGCGTTGGTGCTGGAGTGGGGCTAGTTGGCAGCGGTCTTGGGGCCATCGGTAGCGGACTGAGCAAGGCTGGAAAGTTCATGGGCAGGACTGTCACAGGGACTGGCAACTCTAGAAGGAGTGGTTCATCTACTCCTGTCGGTAATGCTCAGGAAAATGGTGGCGGTGCAAAGCCCCTGTGA 1524 0.4475 MYGWQHMMKHRSAKRIAKAADIKLLGSLNRDDLRKICGDNFPEWISFPVYEQVKWLNKQLTKLWPFVAQAGSMVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLNKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTIVRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGLSDMIDDTVNSIVTDTLQWPHRIVVPIGGIPVDTSELELKPQGKLTVTVVKANDLKNKEMIGKSDPYVVVYIRPLFKVKTKVIENNLNPVWDQTFDLIAEDKETQSLILEVYDKDIGQDKRLGIVKLPLIDLEVETVKEFELRLLSSLDTLKVKDKKDRGSLTIKALYHQFSKEEQLDALEAEKKILEERKKLKEAGVIGSTMDAIDGAASLVGSGVGLVGSGVAAGAGLVGSGIGAGAGLVGSGVGAGVGLVGSGLGAIGSGLSKAGKFMGRTVTGTGNSRRSGSSTPVGNAQENGGGAKPL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0932 507 Coils Coil 374 401 - -
Dere11g0932 507 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 49 232 IPR031468 GO:0008289
Dere11g0932 507 CDD C2 249 343 - -
Dere11g0932 507 MobiDBLite consensus disorder prediction 477 507 - -
Dere11g0932 507 FunFam synaptotagmin-4 isoform X1 242 400 - -
Dere11g0932 507 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 245 373 IPR035892 -
Dere11g0932 507 SMART C2_3c 248 345 IPR000008 -
Dere11g0932 507 Gene3D C2 domain 242 401 IPR035892 -
Dere11g0932 507 MobiDBLite consensus disorder prediction 478 498 - -
Dere11g0932 507 CDD SMP_SYT 42 231 - -
Dere11g0932 507 Pfam C2 domain 247 341 IPR000008 -
Dere11g0932 507 ProSiteProfiles C2 domain profile. 230 348 IPR000008 -
Dere11g0932 507 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 418 IPR045050 GO:0008289
Dere11g0932 507 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 51 231 IPR039010 -
Dere11g0932 507 PRINTS C2 domain signature 289 302 IPR000008 -
Dere11g0932 507 PRINTS C2 domain signature 264 276 IPR000008 -
Dere11g0932 507 PRINTS C2 domain signature 311 319 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0932 Dere-ChrDere11 17808680 17819518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0932 249 337 Lipid Metabolism Gene Families AT4G00700 42.697 4.44e-10 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g0932 11 17808680 17819518 Dere11g0932 11 17808680 17819518 ECH