Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2255 ATGATGGAATCCAAGGCTCTGCGATTCATCAGGTTCCAATCTATTTTCTCGACCGTTCGATCTGGGGACTTCGAAGGGCTGAAGCAACTCTTGGCGCAGCTGAAAGGGAACGATGCGGCGTCGTTTTCTGATATAATGTCCCTCCAGAACGATGCCGGAGAGACGGCGCTGTACATCGCAGCAGAGCATAATCTTGGTGAAATCTTCAGCTACTTGCTCAAGTTCTGTGATTTGGAGATTGTGAAGATCAGGTCCAAATCTGACATGAACGCCTTCGATGTGGCCGCAAAGCGTGGTCATTTAGATATTGTGAAGGAGTTTTTGGACACTTGGCCCCGGCTTTGTAAGGAATGTGACTCCACAAATACTAGCCCCCTATATTCAGCAGCTGTTCAAGACCATTTGGATGTGGTAAATGCTATTTTGGATGTTGATGTCAGTTCAATGTGGATAGTTAGGAAAAATGGAAAAACTGCATTGCACAATGCTGCTAGGTATGGGCTTCTTCGTATTGTGAAAGCACTTATTGACCGAGATCAAGGCATAGTCTGTGTCAAAGATAAAAAGGGTCAAACTGCATTGCATATGGCTGTAAAAGGACAGAGTCCTTTGGTGGTAGAGGAGATATTACAAGCTGATTCCACTATACTGAATGAACGAGACAAGAAGGGAAATACAGCTCTACACATGGCTACAAGGAAGGGTCGTTCACAGATTGTGAGTCTTTTGCTAAGCTATGCAGCTATGGGAGTTAATGCCATCAATAACCAGCAGGAAACAGCATTGGATTTGGCAGATAAACTGCAGTATGGGGATTCAGCTCTGGAGATCAAGGAAGCCCTTGCAGATTATGGTGCCAAGTATGCCAGGAATGTTGGCAAAGTTGATGAAGCAATGGAACTTAAAAGAACTGTAAGTGATATAAAGCATGAGGTGCAGTCACAACTGGTGGCAAATGAAAAAACTCGTAGGCGAGTTTCTGGTATTGCTAAAGAATTGAAAAAACTTCACAGAGAAGCAGTTCAAAATACAATTAACTCTGTCACTCTTGTTGCTGTCCTTTTTGCCTCAATAGCATTCTTGGCTATATTCAATTTGCCTGGTCAATATATCTCGAGAGGACCAGAGGCAGGAAAGGCTAATATAGCTGATAATGTTGCTTTCCAAGCTTTCTGCCTTTTAAATGCTACATCTCTTTTCATCTCTCTATCAGTTGTCGTAGTTCAAATCACTTTGGTAGCCTGGGACACAAGGGCTCAAAAGCAGGTTGTATCAGTGGTTAACAAACTAATGTGGGCTGCCGGTGCTTGTACTTGTGGGGCTTTTCTGGCTTTAGCGTTTGTGGTTGTTGGAGAGCAAACATGGATGGCTGTCACCATAACCCTTTTGGGAGCACCGATTGTAGTTGGAACTCTAGCAAGTCTTTGCTACTTTGTTTTTCGACAACATTTTGGCATTTTCCGCAGTGATTCCCAGAGACGCATCAAGAGAGCAAGTGGGAGCAAATCTTTCTCATGGTCGTACTCTGCAAACATATCTGATATAGATGACTATGATTCTGACATAGAGAAGATCTATGCTCTGTAA 1587 0.4335 MMESKALRFIRFQSIFSTVRSGDFEGLKQLLAQLKGNDAASFSDIMSLQNDAGETALYIAAEHNLGEIFSYLLKFCDLEIVKIRSKSDMNAFDVAAKRGHLDIVKEFLDTWPRLCKECDSTNTSPLYSAAVQDHLDVVNAILDVDVSSMWIVRKNGKTALHNAARYGLLRIVKALIDRDQGIVCVKDKKGQTALHMAVKGQSPLVVEEILQADSTILNERDKKGNTALHMATRKGRSQIVSLLLSYAAMGVNAINNQQETALDLADKLQYGDSALEIKEALADYGAKYARNVGKVDEAMELKRTVSDIKHEVQSQLVANEKTRRRVSGIAKELKKLHREAVQNTINSVTLVAVLFASIAFLAIFNLPGQYISRGPEAGKANIADNVAFQAFCLLNATSLFISLSVVVVQITLVAWDTRAQKQVVSVVNKLMWAAGACTCGAFLALAFVVVGEQTWMAVTITLLGAPIVVGTLASLCYFVFRQHFGIFRSDSQRRIKRASGSKSFSWSYSANISDIDDYDSDIEKIYAL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2255 528 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 19 507 - -
Dere09g2255 528 SMART ANK_2a 87 116 IPR002110 GO:0005515
Dere09g2255 528 SMART ANK_2a 223 253 IPR002110 GO:0005515
Dere09g2255 528 SMART ANK_2a 52 80 IPR002110 GO:0005515
Dere09g2255 528 SMART ANK_2a 121 150 IPR002110 GO:0005515
Dere09g2255 528 SMART ANK_2a 155 184 IPR002110 GO:0005515
Dere09g2255 528 SMART ANK_2a 189 218 IPR002110 GO:0005515
Dere09g2255 528 ProSiteProfiles Ankyrin repeat profile. 223 248 IPR002110 GO:0005515
Dere09g2255 528 Pfam Ankyrin repeats (3 copies) 127 211 IPR002110 GO:0005515
Dere09g2255 528 Pfam Ankyrin repeats (3 copies) 19 109 IPR002110 GO:0005515
Dere09g2255 528 Pfam Ankyrin repeats (3 copies) 218 288 IPR002110 GO:0005515
Dere09g2255 528 SUPERFAMILY Ankyrin repeat 15 286 IPR036770 -
Dere09g2255 528 ProSiteProfiles Ankyrin repeat region circular profile. 223 248 - -
Dere09g2255 528 Pfam Domain of unknown function 339 448 IPR026961 -
Dere09g2255 528 ProSiteProfiles Ankyrin repeat profile. 155 178 IPR002110 GO:0005515
Dere09g2255 528 ProSiteProfiles Ankyrin repeat region circular profile. 155 178 - -
Dere09g2255 528 Coils Coil 319 339 - -
Dere09g2255 528 Gene3D - 12 308 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2255 Dere-ChrDere09 33069119 33073884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2255 2 528 Miscellaneous Gene Families AT2G01680 70.019 0.0 736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g2255 09 33069119 33073884 Dere09g2255 09 33069119 33073884 ECH