Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2178 ATGGGGAAAGGCGCTCTCGCGGATCCTCCGAACTTCAAGAAGTATGGCGTTCCTTTCTACTCAGTCTCATGGATTCCACAAAACCTTGTCAAATCGCAACAGAATCAAACCACCGATGAAGCCGCCGATAAGTCTGCGCTTCCGCCGTCCGACCGGACCGGCGAGCACTACCTCGCTCTCGCTGGCGGGGGTGGAGAAGGCCGCAGCGGTATTCCCAATGCTTTGTTGCTTGCTCACTTCGATGTCGCATCTAATTCTCTCTCTGATCAGCCGGTGGGTAAGCTTGGAACTGATTCTGAGTTGCCTTATAGAATGGCACTTCATCCCGGTGGAGATGGCCTTATTTGCGCAATGCCAAAGAGTTGCAGATTGTTTGAGTGGGATGAAAACAAGAGTGCAGAAACTCATAAGTTGGGTCTGAAGGTGTCTGAGAAAGAGCTCAGTCTGTTGGACGATGTTGGGCAGCAGTTAGCATTGGCATTTGACAATGATGGTACTATGCTAGCTGTTGGTGGGGAGGATGGCAATCTAAGGGTTTTCAAGTGGCCTAGCATGGAAATTATTCTCAATGAGGCTAAAGCTTATTCTACAGTAAAAGACTTACATTTCAGTTCTGATGGTAAATTGCTCGTCTCTTTGGGAAGTGGTGGCCCCTGCAGAGTTTGGGATGTTTCTTCATCAACAGTCTTAACTTCCTTGTTAAGTAAAAATGGTGAGGTTTTCAGCTCTTGCAGATTTTCTCAAATGAATGATAGGACCCATGTATTGTATATCACTGCCATGACAGACAAAGGTGGAAGCATTCTGACATGGGATATGAAGACTGGGGAAAGGATGGGCTCAAAGCATATTATTCGTGATGCAATCTCTTCATTGAATGTCTCAACTGATGGAAAGTTACTTGCATGTGGAACTCCTTCAGGAGATATTGTGATTGTAAATTCAACAAATATGCAGATTCTGATGAAGACAAAAAAGGCTCACCTTGGCATAGTAACTGCATTAGCATTCTCCCCTGATTCAAGGGCCTTGGCATCTGTATCCTTGGATTCAAGTGCAAGGGTTACTGTAATTGAGGAGAAGCAGAAAAGTGGAGGATTGAGCTTGTGGATTGCTGTACTTGTCATCTTATTTGCAATAGCTGCATACTTACTGAAATTTCAGGAAAAATTGACAAGTGAAAGTTATGATTTCTTTAAAAATTGA 1206 0.4428 MGKGALADPPNFKKYGVPFYSVSWIPQNLVKSQQNQTTDEAADKSALPPSDRTGEHYLALAGGGGEGRSGIPNALLLAHFDVASNSLSDQPVGKLGTDSELPYRMALHPGGDGLICAMPKSCRLFEWDENKSAETHKLGLKVSEKELSLLDDVGQQLALAFDNDGTMLAVGGEDGNLRVFKWPSMEIILNEAKAYSTVKDLHFSSDGKLLVSLGSGGPCRVWDVSSSTVLTSLLSKNGEVFSSCRFSQMNDRTHVLYITAMTDKGGSILTWDMKTGERMGSKHIIRDAISSLNVSTDGKLLACGTPSGDIVIVNSTNMQILMKTKKAHLGIVTALAFSPDSRALASVSLDSSARVTVIEEKQKSGGLSLWIAVLVILFAIAAYLLKFQEKLTSESYDFFKN 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2178 401 MobiDBLite consensus disorder prediction 32 61 - -
Dere09g2178 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 232 IPR001680 GO:0005515
Dere09g2178 401 SMART WD40_4 188 223 IPR001680 GO:0005515
Dere09g2178 401 SMART WD40_4 275 314 IPR001680 GO:0005515
Dere09g2178 401 SMART WD40_4 318 357 IPR001680 GO:0005515
Dere09g2178 401 SMART WD40_4 143 181 IPR001680 GO:0005515
Dere09g2178 401 Gene3D - 50 364 IPR015943 GO:0005515
Dere09g2178 401 PANTHER PROLACTIN REGULATORY ELEMENT BINDING PROTEIN 12 388 IPR045260 GO:0005085
Dere09g2178 401 Pfam WD domain, G-beta repeat 323 355 IPR001680 GO:0005515
Dere09g2178 401 Pfam WD domain, G-beta repeat 158 180 IPR001680 GO:0005515
Dere09g2178 401 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 57 355 IPR011047 -
Dere09g2178 401 FunFam SEC12-like protein 2 50 362 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2178 157 304 Miscellaneous Gene Families AT5G08390 26.846 4.46e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g2178 09 31206001 31214128 Dere09g2178 09 31206001 31214128 ECH