Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2118 ATGGCCGCATCGCCTTCTACTGCGGCCACCACCAACATCATGCTTGCCATCTTCGAGAAGAAGACGAACCCAATCGATCTCTATCGCCCTCTTCGCAACTATGTTGCTTTCCACTACTCCGAACGCGAGGCCCAGAACCTGGAAGACGACCTTCAAACCCTTAAGCAACTCCGTTCCGACGTCGAGCGCCACTCTGACCCCTCCCTGACCTCTCGCCGTGACTTCCTTCAATCCTATTACAAAGCTCTCTGCCTTGTGGAGACCCGTTTTCCTATATCACCTGACCAAGATCACGTCAACACTCTCAGCTTTGTGTGGTTCGATGCGTTTAAGCCCAAACAGAAGGCGACGCAACAGAATATTCACCTCGAGAAAGCCGCGGTGTTGTTCAATTTAGGTGCAGTTTATAGTCAGATTGGACTATCCTATGATCGGAATACTGTTGATGGCCGGAGGCAAGCCTCGCATGCGTTTATTGCAGCTGCAGGGTCGTTTGCTTACCTCAGGGATAATGCGGCGATGAAGGCGTCAATTGGGAGTTCCACAACGGTGGATTTGTCTGTGGAGTGCGCAGGAATGTTGGAGAGGTTGATGCTGGCTCAAGCACAAGAGTGCGTGTTTGAGAATACTATTGCAAAAGGAAGCACCCCGGGGGTTTGTGCTAAGATCTCTAGGCAGGTTGGGCTATACTATGAGGAAGCTTTAGCTGCATTGAATATTGCCCCTTTAAACCAGCATTTTGATAAGTCATGGATAGCACATGTGCAGCTAAAGGCAGCTCTATTCTTTGCAGAAGCTTGCTATAGGTATGGATTGGAGCTTCATGAGAAAGAAGAGATAGCGGAGGAGATCGCAAGACTTAGGAGTGGGGTTAATGCACTAACTGAGGCAAAGAAAACCTCGAAAGGTGCTGCTGCACAAATCCTAGATGCAATCAGTAAGTTAGAGGCCAATCTTAACCGGAACCTGGAAAGGGCTGTCAAAGAGAATGATAGAGTTTATCTCATGAGGGTTCCTTCCCCCAATTCCTTACCACCTCTTCCTGCATTTTCCTTGGTGAAGTCAATGGCAATGAATGAAGTGCTGGATGCAAGTAAAGAGAAAATGTTTGCAAGTCTTGTTCCTGACAGCAGTGCAAAGGCTCTCTCCAGGTACACTGAGATGGTAGATGAAATTATAAGAACGCAGGCTGAAAAATTACAACAAGCTAGTGAATTAACCCGAGTTAGGCTAAAGGAGATGGAGCTGCCTGATTCTATTCTTGCTTTGGAAGGAAATTTTACTCTACCAACACATCTCAAAGAAGATGTGGAAGCTGTGCAGATTAGTGGGGGTCCTGCTGGTTTGGAAGCAGAGATACAGCAACTTAAGGACCTAAGGAGGGTGAATCAAGAAATGTTAGTCCAGACAGAGGAGTTGTTGCAGAAGGAAGCAAGAGAAGATGCTCAATTTAGAAGCCAATATGGGACAAAGTGGACTAGGCCTCAATCAAGTACTTTGACAAAGAACTTGCAGGATAGGTTAAATAGGTTTGCAGGTAACTTGAAGCAAGCTGCGGAAAGTGATGGTCGGATTGAGCGTTCAGTTAGAGAATATTCAGCTCTTATGTCAATTCTCGACAGCCGTCCGATTGAATCTGCACTCCCTTCCTTGGCAAGGCCAATAATGTCTTTGGATGCCAATGAAGATGCTATTGTGGGGTCTCTCAAGCAGAGCTTGAGGCAGCTTGAAACTCTGGGAGCTCAGAGGGCTGGCCTTGAAGACATGCTTAAAGAGATGAAAAGAAAGGATGATATACTCCCCAAGTTGATGACATCAACTGGCTCTTATGAGGATCTTTTCAAGAAAGAGATAGCAAAATATGACCATATTTGTGAAGAAATAGCTCAAAATATTGAAGCACAAGAGCAGTTGTTGATGCAGATCCAGGCACAAAATGACGAGTTCTCTTCTATCTTTAATCTTGAAGATTACAAAGCTTCACGTGAAAAATGCTACAAGCAGATTGAAGCTGCTATAGCAAAGTATCGAGAAATAAAAGACAACATCAATGAAGGGTTGAAATTTTACGTTACATTGCAGGATGCAATCACAAATGTAAAGCAGCAATGCAGTGACTTTATAATGACAAGAAACATCCAGTGCCGGGAAATGATTGAAGATGTCCAGAGACAAGTAGCTGGTCTCAGTTTCCAGGATAACAAATCAGCGGGTCCTTCTAACAGCAGCTACCCTCCGATGGGACACCAAATGCAGAGATCTTATCCACAGCAAACAGATCCTCGCCCCCAAACTCCATATTATCAGCCGCCGGAGCAGCCACCAGTGGCTGGGTATGTTCAACCCCCTCCTCCTTATGGTTCTGCGCGTCAGCCTCCTCCTCCATACCACGTTCCACACACATCAGCTACCCCATATCCTCCTTCTCAGGTTCCCCAGCAGCCACCTGCTGGCCATGACTATGGCCAACCTGCATATCCTGGGTGGCGTGGTCCATATTATAATGCTCATGCTCAACAACCTACTTCAGTTCCTCGACCACCTTACACCATTCCAGGTCCATATCCTCCTCACCAAAGTGGCTACTATAAGCAGCAATAG 2601 0.4633 MAASPSTAATTNIMLAIFEKKTNPIDLYRPLRNYVAFHYSEREAQNLEDDLQTLKQLRSDVERHSDPSLTSRRDFLQSYYKALCLVETRFPISPDQDHVNTLSFVWFDAFKPKQKATQQNIHLEKAAVLFNLGAVYSQIGLSYDRNTVDGRRQASHAFIAAAGSFAYLRDNAAMKASIGSSTTVDLSVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNIAPLNQHFDKSWIAHVQLKAALFFAEACYRYGLELHEKEEIAEEIARLRSGVNALTEAKKTSKGAAAQILDAISKLEANLNRNLERAVKENDRVYLMRVPSPNSLPPLPAFSLVKSMAMNEVLDASKEKMFASLVPDSSAKALSRYTEMVDEIIRTQAEKLQQASELTRVRLKEMELPDSILALEGNFTLPTHLKEDVEAVQISGGPAGLEAEIQQLKDLRRVNQEMLVQTEELLQKEAREDAQFRSQYGTKWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDGRIERSVREYSALMSILDSRPIESALPSLARPIMSLDANEDAIVGSLKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSTGSYEDLFKKEIAKYDHICEEIAQNIEAQEQLLMQIQAQNDEFSSIFNLEDYKASREKCYKQIEAAIAKYREIKDNINEGLKFYVTLQDAITNVKQQCSDFIMTRNIQCREMIEDVQRQVAGLSFQDNKSAGPSNSSYPPMGHQMQRSYPQQTDPRPQTPYYQPPEQPPVAGYVQPPPPYGSARQPPPPYHVPHTSATPYPPSQVPQQPPAGHDYGQPAYPGWRGPYYNAHAQQPTSVPRPPYTIPGPYPPHQSGYYKQQ 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2118 866 Pfam BRO1-like domain 14 393 IPR004328 -
Dere09g2118 866 Coils Coil 576 596 - -
Dere09g2118 866 Coils Coil 625 645 - -
Dere09g2118 866 Coils Coil 449 476 - -
Dere09g2118 866 Gene3D alix/aip1 in complex with the ypdl late domain 375 653 - -
Dere09g2118 866 PANTHER PCD6 INTERACTING PROTEIN-RELATED 12 856 - -
Dere09g2118 866 SMART BRO1_2 13 397 IPR004328 -
Dere09g2118 866 MobiDBLite consensus disorder prediction 731 866 - -
Dere09g2118 866 Coils Coil 309 332 - -
Dere09g2118 866 ProSiteProfiles BRO1 domain profile. 12 407 IPR004328 -
Dere09g2118 866 MobiDBLite consensus disorder prediction 763 814 - -
Dere09g2118 866 Gene3D alix/aip1 like domains 8 374 IPR038499 -
Dere09g2118 866 Gene3D alix/aip1 like domains 421 702 - -
Dere09g2118 866 CDD V_Alix_like_1 375 711 - -
Dere09g2118 866 MobiDBLite consensus disorder prediction 731 762 - -
Dere09g2118 866 CDD BRO1_Alix_like_1 14 369 - -
Dere09g2118 866 Coils Coil 277 297 - -
Dere09g2118 866 Coils Coil 37 64 - -
Dere09g2118 866 Pfam ALIX V-shaped domain binding to HIV 429 713 IPR025304 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2118 Dere-ChrDere09 29902219 29911584 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g2118 09 29902219 29911584 Dere09g2118 09 29902219 29911584 ECH