LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere09g2003	ATGGTTTCTCCTACCTCTTTAGTTTTTCTGTGTCTCTCCTCCCTTCTGCTAGTCTCACTCTTATGTGCAGTGGGAGCAGCAAGTTCTTCCCCCAAGCCCACCAAAATCGGGCAAGGCTATCGCTTAGTCTCCATTGAAGAGACCCCTGATGGTGGCCTCGTAGGTCACCTCCAAGTAAAGCAGAAGAACAAAATCTACGGTCCTGATATCCCTCTCTTGCAGCTCTATGTCAAGCACGAGACGGAGAATCGTTTGAGGGTACACATAACCGACGCGGAGAAACAAAGATGGGAAGTACCGTACAGTCTCTTGCCAAGGGAGCAACCTCCAGCTCTGAAGCAGACGATTGGAAGGTCGAGGAAGAACCCTATCTCTGTTTCAGAGTACTCTGGTTCTGAGCTTATATTCAGCTACACTTCAGACCCATTTAGCTTCAAGGTGAAAAGGAAGTCGGATGGGCAGATTCTCTTCGATTCGAGCTCGGATGAATCAGACCCATATGGCCAAATGGTGTTCAAGGACCAGTACCTTGAGATTTCAACCAAATTGCCCAAAGATGCGTCCTTGTATGGCTTGGGGGAGAACACACAGCCACACGGGATCAAACTGTACCCGAACGACCCGTACACTTTGTACACCACTGATATTTCAGCCATTAATCTCAATGCTGATCTGTATGGGTCGCACCCTGTGTATATGGATCTCAGAAATGTCGGTGGTGAGCCCTCTGCACACGCTGTTCTGTTGCTTAATAGCAATGGGATGGATGTGTTTTACAGGGGAACTTCTCTGACGTACAAGATTATTGGAGGTGTTTTCGATTTTTACTTCTTTGCAGGGCCTACACCTCTAAATGTTGTTGATCAGTATACTTCTTTAATTGGCAGGCCAGCTCCAATGCCTTATTGGTCATTTGGATTCCACCAATGCAGATGGGGTTACCATAACCTATCTGTTGTAGAAGATGTTGTTGATAATTACAAGAAGGCTCAAATCCCACTTGATGTGATCTGGAATGATGATGATCACATGGACGGGAAAAAGGACTTCACACTTAACCCGACCAACTTCCCTCGTCCAAAGCTTTTAGCCTTCCTGGACAAAATACATAGCATTGGTATGAAATACATTGTCATTATCGATCCAGGAATTGGTGTTAATGCCAGTTATGGTGTCTATCAGAGGGGCATGGCTAATGATGTTTTTATCAAGTATGATGGCGAACCCTTCATGGCTCAAGTTTGGCCGGGGGCAGTTTATTTTCCAGATTTTCTGAATCCCAAAACAGTTTCATGGTGGGGTGATGAGGTCCGCCGCTTCCATGAACTTGTTCCTGTTGATGGCCTATGGATTGACATGAATGAAGTTTCAAATTTCTGTTCTGGAAAGTGCACAATTCCCAAGGGTAAGCAGTGCCCAACTGGAACCGGACCTGGATGGATATGTTGCTTAGATTGCAAAAACATTACAAAGACAAGATGGGATGACCCACCCTATAAGATAAATGCTTCAGGAATACAGGCTCCAATAGGCTACAAAACCATAGCCACTAGTGCTGTCCACTACAATGGTGTTTTGGAGTATGATGCTCACAGCATTTATGGTTTCTCCCAAGCTGTTGCAACTCACAAGGCCCTTCAAGGGCTTCAGGGCAAACGACCATTTATCCTGTCGCGCTCCACTTATGTTGGTTCAGGCAAATATGCTGCTCATTGGACTGGTGACAATAAGGGCACATGGGAGGACTTGAGGTACTCCATATCTACAATGCTGAACTTTGGCTTATTTGGGGTTCCAATGGTTGGTTCAGATATATGTGGGTTCTACCCAGCGCCAACTGAAGAACTCTGCAACCGATGGATTGAAGTAGGTGCTTTCTATCCTTTCTCAAGGGACCATGCAAACTATTACTCCCCAAGACAAGAACTTTACCAATGGGAATCGGTTGCCGAGTCTGCTCGAAATGCCTTGGGTATGAGGTATAAGATCCTCCCTTACCTCTACACATTGAACTATGAGGCTCATACCTGTGGAGCCCCAATTGCCAGGCCACTTTTCTTCTCATTTCCAAGCTACACTGAATGCTATGGTCTCAGCACCCAGTGGTTGCTAGGGAGTGGTCTTATGATTTCTCCGGTGCTTGAGCAGGGCAAAACGCAAGTGAAAGCACTCTTCCCTCCTGGCACCTGGTACAGTTTGTTTGACCCAACACACACCATAGTATCGAAAAATGGGATGTATGTCACCCTTGATGCACCTCTGCATGTAGTCAATGTGCATTTGTATCAGAACACCATTCTCCCAATGCAGCAGGGAGGATTGCTTTCCAAGGAAGCAAGAATGACACCGTTCAGCCTTGTAGTGGCCTTTCCGGCTGGTGCCACCGAAGGAGAAGCTAAAGGAAATCTTTACCTTGATGATGATGAGCTGCCAGAAATGAAGCTTGGAAATGGCTATTCAACATACATTGATTTCTATGCAAGTTTGAAGCAAGGAAGTGTGAAGGTGTGGTCACAAGTCCAAGAGAGCAAGTTTGCTTTAGATAAAGGTTTGATTATTGAGAAGATAACTGTGTTGGGATTAGATGGAAGTGGTGCACCATCTGAACTAGCACTTGATGGCAAACCAGTGGTGGGTGTATCAGATGTGGAGGTCAGTACATTAGAACACAAGTATGTCCAGCAGGGCCAAGAAGATGGAGAGAAGAAGACAATGATGGTAGAGGTGAAGGGCTTGAAAATCCCTGTGGGTAAAAATTTTGCGTTGACCTGGAAAATGGGGGTTTCAGGTTGA	2793	0.4579	MVSPTSLVFLCLSSLLLVSLLCAVGAASSSPKPTKIGQGYRLVSIEETPDGGLVGHLQVKQKNKIYGPDIPLLQLYVKHETENRLRVHITDAEKQRWEVPYSLLPREQPPALKQTIGRSRKNPISVSEYSGSELIFSYTSDPFSFKVKRKSDGQILFDSSSDESDPYGQMVFKDQYLEISTKLPKDASLYGLGENTQPHGIKLYPNDPYTLYTTDISAINLNADLYGSHPVYMDLRNVGGEPSAHAVLLLNSNGMDVFYRGTSLTYKIIGGVFDFYFFAGPTPLNVVDQYTSLIGRPAPMPYWSFGFHQCRWGYHNLSVVEDVVDNYKKAQIPLDVIWNDDDHMDGKKDFTLNPTNFPRPKLLAFLDKIHSIGMKYIVIIDPGIGVNASYGVYQRGMANDVFIKYDGEPFMAQVWPGAVYFPDFLNPKTVSWWGDEVRRFHELVPVDGLWIDMNEVSNFCSGKCTIPKGKQCPTGTGPGWICCLDCKNITKTRWDDPPYKINASGIQAPIGYKTIATSAVHYNGVLEYDAHSIYGFSQAVATHKALQGLQGKRPFILSRSTYVGSGKYAAHWTGDNKGTWEDLRYSISTMLNFGLFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRQELYQWESVAESARNALGMRYKILPYLYTLNYEAHTCGAPIARPLFFSFPSYTECYGLSTQWLLGSGLMISPVLEQGKTQVKALFPPGTWYSLFDPTHTIVSKNGMYVTLDAPLHVVNVHLYQNTILPMQQGGLLSKEARMTPFSLVVAFPAGATEGEAKGNLYLDDDELPEMKLGNGYSTYIDFYASLKQGSVKVWSQVQESKFALDKGLIIEKITVLGLDGSGAPSELALDGKPVVGVSDVEVSTLEHKYVQQGQEDGEKKTMMVEVKGLKIPVGKNFALTWKMGVSG	930

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere09g2003	930	SUPERFAMILY	(Trans)glycosidases	286	678	IPR017853	-
	Dere09g2003	930	SUPERFAMILY	Glycosyl hydrolase domain	680	760	-	-
	Dere09g2003	930	Gene3D	-	765	929	IPR013780	-
	Dere09g2003	930	CDD	GH31_MGAM_SI_GAA	295	675	-	-
	Dere09g2003	930	Pfam	N-terminal barrel of NtMGAM and CtMGAM, maltase-glucoamylase	52	185	IPR031727	-
	Dere09g2003	930	Gene3D	glycosyl hydrolase (family 31)	34	296	-	-
	Dere09g2003	930	CDD	GH31_N	177	295	-	-
	Dere09g2003	930	Pfam	Glycosyl hydrolases family 31	276	767	IPR000322	GO:0004553\|GO:0005975
	Dere09g2003	930	ProSitePatterns	Glycosyl hydrolases family 31 active site.	448	455	IPR030458	-
	Dere09g2003	930	SUPERFAMILY	Galactose mutarotase-like	37	283	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Dere09g2003	930	PANTHER	ALPHA-GLUCOSIDASE	58	889	-	-
	Dere09g2003	930	Gene3D	Glycosidases	297	662	-	-
	Dere09g2003	930	Gene3D	-	663	762	IPR013780	-
	Dere09g2003	930	FunFam	Alpha-glucosidase 1	33	296	-	-
	Dere09g2003	930	FunFam	Alpha-glucosidase 1	663	763	-	-
	Dere09g2003	930	Pfam	Galactose mutarotase-like	187	255	IPR025887	-
	Dere09g2003	930	FunFam	Maltase-glucoamylase, intestinal	297	662	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere09g2003	Dere-ChrDere09	26656886	26661145	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere09g2003	36	929	Glycoside Hydrolase	AT1G68560	77.293	0.0	1489

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere09g2003	09	26656886	26661145	Dere09g2003	09	26656886	26661145	ECH