Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1587 ATGGTTATCGTGGGCTACTTTGAAACTCATGACCTGAGCCCAGGATTCCACAATCCACATGCTGTGGTATGTGCTATGCGCTATGCAATTCTAATCCGCTTCCGCCGTTACGCTTCTTCGCCTTCTGCATTTTCCCCTTCTCCGCTTCACAAAGCTCTGCGCTTTTTCTCCTTCTCCTCCGCATCGCAAGCGCCTCCTCAAGCAGCAGCATTAGCATCAGCAGCCATGGTGGCCCATGCCAAAGACGAAGCCTACCTCAGCACCATCATACCGAAGCGTATTAAACTCTTCGAGGCTATCCAAGCTCAGCAACTCGCTCATCGCCAGTCCCTCCCCGCCGATCCCATCAAGATTACTTTGCCGGACAAGAATGTCAAGGAAGGGAAGAAGTGGTTGACCACGCCCTTGGATATTGCCAAAGAGATTTCCAAGAATTTGGCTGCCAATGCTTTAATTGCCAAAGTAAATGGGGTTCTATGGGATATGACAAGGCCCTTGGAAGAGGATTGTGAGCTTCAGATTTTCAAGTTTGAAGACGATGAAGGACGTGACACTTTCTGGCATTCCAGTGCTCACATCCTAGGGCAGGCCCTTGAGTCGGAGTATGGATGTAAGCTCTGCATTGGGCCCTGTACCACTAGAGGAGAGGGATTCTATTATGATGCATTTTATGGTGACTTGAGTTTGAACGAGGATCACTTTAAGCAGATTGAGTCAGGGGCATCAAAGGCTGTTTCGGAAAAACAACCGTTTGAACGCATTGAAGTATCAAGGGATCAGGCACTTGAAATATTTTCTGATAATAAGTTTAAGGTTGAAATCATCAATGATTTGCCTGCTGACAAAACTATCACAGTATACAGATGTGGTCCCTTGGTTGATTTGTGTCGTGGACCACATATACCTAACACATCCTTTGTGAAAGCATTTGCTTGTCTAAAGGCTTCATCAGCATATTGGAGAGGGGACAAAGATAGGGAAAGTTTACAGAGAGTTTATGGGATATCTTATCCTGATCAGAAGAGTTTGAAGGAGTATATCAACCGGTTGGAGGAGGCTAAAAAGTATGACCACAGATTGCTGGGTGTGAAACAGGAACTTATTCTACATCATGAATGGAGCCCAGGAAGTTGGTTTTTCCTTCCACATGGTACACGGATTTACAACAAACTAATGGAGTTTATTCGAAATCAATATAGAGAAAGAGGATACCAAGAGGTTATATCCCCAAATATATATAATATGGAACTCTGGGAACAATCTGGACATGCTGCAAACTACAAGGAGAATATGTTTGTCTTTGAGGTTGAAAAGCAAGACTTTGGGCTGAAACCTATGAATTGCCCAGGGCACTGCCTGATGTTTAAGCACAGAGTTCGCTCATATAGAGAACTTCCTCTTCGACTGGCTGATTTTGGGGTTTTACATCGGAATGAGGCTAGTGGTGCCCTGAGTGGATTGACACGTGTAAGGAGATTTCAGCAGGATGATGCCCATATCTTCTGCAGGGAGTCCCAGGTAAAGGATGAAGTGAGACGTGCCTTGGATTTCATCAATTATGCCTATAACATCTTTGGTTTCACCTATGATCTGAAGCTTTCAACGAGGCCAGAGAAATACCTTGGAGATTTATCAACATGGGAAAAGGCTGAAAATGCTCTTAAAGAAGCTCTAGATGAGTTTGGGAAGCCTTGGCAGATGAATGAAGGGGATGGTGCATTCTATGGACCAAAAATAGATATCAGTGTATCTGATGCATTGAACAGGAAATTTCAGTGTGCAACTTTGCAGCTTGACTTCCAACTTCCTGATCGTTTTAAGTTGGAATACTCAGCTGAGGATGAAGCCAAAATTGAAAGACCTGTTATGATACACAGAGCCATTCTAGGATCTGTTGAGCGCATGTTTGCTATATTATTGGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCGATTGTTTGCCCTGTGTCAGAGAAATCACAATCTTATGCAATTGAGGTGCGAGATAAGATCCATCAAGCAGGTTATCATGTTGATGCTGATACAACTGATCGGAAGATTCAGAAGAAGGTGCGAGAAGCTCAGTTAGCACAATACAACTTTATATTGGTTGTTGGAGAGGAGGAAGCTAAGACTGGACAGGTTAGTGTACGTGTTAGAGATAACTCGGACCATAAGGTCATGAGCATTGAGAGCCTACTCAATCTCTTCAGTGATGAAGTTGCAGCTTTCCATTGA 2253 0.4407 MVIVGYFETHDLSPGFHNPHAVVCAMRYAILIRFRRYASSPSAFSPSPLHKALRFFSFSSASQAPPQAAALASAAMVAHAKDEAYLSTIIPKRIKLFEAIQAQQLAHRQSLPADPIKITLPDKNVKEGKKWLTTPLDIAKEISKNLAANALIAKVNGVLWDMTRPLEEDCELQIFKFEDDEGRDTFWHSSAHILGQALESEYGCKLCIGPCTTRGEGFYYDAFYGDLSLNEDHFKQIESGASKAVSEKQPFERIEVSRDQALEIFSDNKFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAFACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYINRLEEAKKYDHRLLGVKQELILHHEWSPGSWFFLPHGTRIYNKLMEFIRNQYRERGYQEVISPNIYNMELWEQSGHAANYKENMFVFEVEKQDFGLKPMNCPGHCLMFKHRVRSYRELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQVKDEVRRALDFINYAYNIFGFTYDLKLSTRPEKYLGDLSTWEKAENALKEALDEFGKPWQMNEGDGAFYGPKIDISVSDALNRKFQCATLQLDFQLPDRFKLEYSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYAIEVRDKIHQAGYHVDADTTDRKIQKKVREAQLAQYNFILVVGEEEAKTGQVSVRVRDNSDHKVMSIESLLNLFSDEVAAFH 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1587 750 Gene3D - 646 749 IPR036621 -
Dere09g1587 750 Pfam Anticodon binding domain 655 743 IPR004154 -
Dere09g1587 750 Gene3D Bira Bifunctional Protein; Domain 2 337 645 IPR045864 -
Dere09g1587 750 FunFam Threonine--tRNA ligase 2, cytoplasmic 339 646 - -
Dere09g1587 750 CDD TGS_ThrRS 116 181 - -
Dere09g1587 750 SMART tRNA_SAD_4 284 333 IPR012947 GO:0004812|GO:0005524|GO:0043039
Dere09g1587 750 PRINTS Threonyl-tRNA synthetase signature 577 605 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Dere09g1587 750 PRINTS Threonyl-tRNA synthetase signature 621 634 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Dere09g1587 750 PRINTS Threonyl-tRNA synthetase signature 476 499 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Dere09g1587 750 PRINTS Threonyl-tRNA synthetase signature 648 660 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Dere09g1587 750 PRINTS Threonyl-tRNA synthetase signature 443 471 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Dere09g1587 750 CDD ThrRS_core 357 653 IPR033728 -
Dere09g1587 750 FunFam Threonine--tRNA ligase mitochondrial 1 647 750 - -
Dere09g1587 750 FunFam Threonyl-tRNA synthetase, mitochondrial 180 337 - -
Dere09g1587 750 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 284 333 IPR012947 GO:0004812|GO:0005524|GO:0043039
Dere09g1587 750 Gene3D - 179 336 - -
Dere09g1587 750 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 382 648 IPR006195 -
Dere09g1587 750 ProSiteProfiles TGS domain profile. 114 176 IPR004095 -
Dere09g1587 750 SUPERFAMILY Class II aaRS and biotin synthetases 357 640 IPR045864 -
Dere09g1587 750 SUPERFAMILY TGS-like 116 176 IPR012676 -
Dere09g1587 750 Gene3D - 114 176 IPR012675 -
Dere09g1587 750 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 437 643 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Dere09g1587 750 Hamap Threonine--tRNA ligase [thrS]. 181 748 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Dere09g1587 750 Pfam TGS domain 116 176 IPR004095 -
Dere09g1587 750 SUPERFAMILY ThrRS/AlaRS common domain 179 355 IPR018163 GO:0000166
Dere09g1587 750 NCBIfam threonine--tRNA ligase 187 741 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Dere09g1587 750 SUPERFAMILY Class II aaRS ABD-related 641 746 - -
Dere09g1587 750 FunFam Threonine--tRNA ligase, cytoplasmic 114 175 - -
Dere09g1587 750 CDD ThrRS_anticodon 653 742 IPR047246 -
Dere09g1587 750 PANTHER THREONINE-TRNA LIGASE 85 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1587 Dere-ChrDere09 20205856 20221714 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1587 09 20205856 20221714 Dere09g1587 09 20205856 20221714 ECH