Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1571 ATGGCGGATTCCGCCTCTTCTCCTGCGATTTCAGAAGCCAACCCGCAAAAAACCGAGTCGGCTGCTCCCAATTATCATCAGAATCAACCCGATCCGGTTGCTGCCTCCGCACCCCCAGCGATACAGCCTCCTTCATCGTCCGCTGCGTCCGTCGTTGCAGTAAACCCTAACTCGAATTCATCATTAGTACCTACGCCACCGCCGCCGCCTCCTTCTATTTCATATGCGGCGGCGGGGGCGGCACCCCAGGTCTCAGGTGGAGCTGTTGTCCCTCCGGTCGTTCCTTCCTTCAGGCCAGTACCTCCGCAGACTCCTCAGTTTTCTCCCATACCTAATCCCCTTAACTATCAAAACCCCGCTGTTCAGCCACCTGGTGTAAGCTCTGCCTCCGCGATGACTCATGGTGTGCCTAGTGGTACCGGAGCGGTTCCAGTGCCAGCGCAGATGCAGCCAATGATGATGCCTTATCAAATTCCCCCCGGTCAGCCTCCTAATCCGGCCTTGAGACCTTATGCACCGATGCCTAATGGATATACTGCCATTCCAGGAGCTCCACAAGGGACTATGCCTCCACAGGGAATACCTCGGTACCCTCCTCCTTATGGAACTATGGTTCGCCCGTCATATCCACCACGCCCTCCTGGAGCTGTTAATGTGCTTCCAGCTGTTTCACGTCCTCCTGTTGCTGGGATTCCTCCTGTTCGGCCTATCATTCCCCCTGTGGTTAGACCAATCATTGCTCCTAGTGTTACTCCAGCTGAGAAACCACAAACTACAGTTTATATTGGAAAGATTGCACCAACAGTGGAAAATGAATTTATGCTTTCACTGCTTCAGTTATGTGGCCCTGTCAAGAGTTGGAAACGTCCTCAAGATCCATCAAATGGAACTCCTAAAAGCTTTGGGTTTTGGGAGTTTGAGTCTGCTGAAGGGGTTCTCCGTGCCTTACGTTTGCTTAATAAATTGAATATTGACGGGCAAGAATTGATGGTCAATGTTAATGATGCTACAAAAGAATATGTAGAGCGGTATGTTAAGAAAAAAACTGAGAACTTGAAGAAAAATGATACCCAGGCTGTTGGATCTGAAAAAGATGATGAGAGTGCACAACCTCCGAATGCAAATGAGGATGGGAAGCCTGATGCCGAGCTTTCAAAGAAAGAGGAAAGTAAGTCAGGGAACAAGGAAAATCATGATGTGACAAACTTCATTACTGATGAAGACAGGGAAGCTGATCGAGAGGCTGTGGAGAAGATTACGAACATGATAGAGGAGAGGTTGAAGACCAGACCTCTGCCTCCACCTCCCGCCCAGGCAACTCCTGATGGCCCTGCAAATTTAACTTCGGAACAATCTGCAAAAACAAGAGATGGAGTTGATGGAGATATGGTGAATAATGAAGCAGGTGATGATAAAAATGACAAGGAGACAAACAGTGACAATAAAGCAACCGGTGAACATGATAGGCCTGAGTCTCCTGATAGAAGACACGATAGGAGGAGCAGAGAGAGAGACCGAGACAGGGAACTAAAACGAGAAAAGGAAAGGGAACTTGAAAGATATGAACGAGAAGCTGAGCGTGAACGCATTAGAAAAGAGAGGGAACAAAGGAGGAGGATTGAGGAGGCTGAGCGTCATTATGAAGCATGCTTGAAGGATTGGGAGTATAGAGAAAGAGAGAAAGAGAAAGAACGTCAATATGAAAAGGAGAAGGAGAAAGAAAGGGAGCGCAAAAGGAGAAAGGAGATACTTTATGATGAAGAGGACGAGGATGATGATTCAAGGAAGAGGTGGCGTAGAAGTGTGTTGGATGAGAAGAGAAAGAAAAGATTGCGGGAAAAGGAAGATGACCTGGCAGACAGACAAAAAGAAGATGAAGAAATTGCTGAGGCCAAGAGGAGGGCTGAGGAGGATCAGCAACAGAAGCGTCAGAGAGATGCACTGCGGCTGTTATCTGACCATGTGATGAATGGTGGTGAAAGAAGCATGTCTACTGATGATATGACTAAAGAAGCCAAAGGTATTGTTACAGAACAAGACACTGTAGCTGACTATGGTTATGAAGGCCACAGCGGTGATAGTAATCCACTAAGTGGCATGAATGATGAATCAACCATGGCATCAGTTGCTGCTACTGATACACGACAAAGTGGCAATGCCCCTGCTAAGAAGTTGGGTTTTGGTCTGGTTGGTTCTGGAAAAAGAACTACTGTCCCTTCTGTTTTCCATGAGGAGGAGGATGATGACGCACACAAGGATAAAAAGATGAGGCCTCTGGTTCCTATTGATTACTCAACTGAGGAACTGCAGGCTGTTCAACCTACTGGTTCTGGGGCCCCACCCCCAAATTTGGCTGCAGCAGCAGAATTTGCCAAACGTTTATCCAATGCAAATAGTAAGGAAGAGAAGCAAGACGGAGAACGGGATAGAAGCAGGCGTTCTAATGAGAAGTCTAACCACAGGGACAGGGACAGGGACAGGAACGATGAGGATGGCTCTCACAACAAAGAAGAAAGCAGGGAAAAGATTTCTGATCGTGATAGGGACCGGGATCGTGGGTTGGAGAAACTGAAGACATCAGATAACAAAAAGCTATTGGATGCAAAGCAATTGATTGATATGATACCAAAGACCAAAGAGGAGCTGTTCTCATATGAGATAAACTGGGCAGTGTATGACAAGCATCAGCTGCATGAAAGGATGAGACCGTGGATATCAAAGAAGATCACGGAATTTTTGGGGGAAGAAGAAACCACATTGGTAGATTACATTGTTTCAAGTACGCAGGAACATGTGAAAGCTTCCCATATGCTGGAGTTGCTTCAATCCATTTTAGACGACGAAGCGGAAATGTTTGTCCTCAAGATGTGGAGGATGCTTATTTTTGAAATAAAGAAGGTGGAGACAGGCCTCGCTTTGAGGTCAAAATCATGA 2934 0.469 MADSASSPAISEANPQKTESAAPNYHQNQPDPVAASAPPAIQPPSSSAASVVAVNPNSNSSLVPTPPPPPPSISYAAAGAAPQVSGGAVVPPVVPSFRPVPPQTPQFSPIPNPLNYQNPAVQPPGVSSASAMTHGVPSGTGAVPVPAQMQPMMMPYQIPPGQPPNPALRPYAPMPNGYTAIPGAPQGTMPPQGIPRYPPPYGTMVRPSYPPRPPGAVNVLPAVSRPPVAGIPPVRPIIPPVVRPIIAPSVTPAEKPQTTVYIGKIAPTVENEFMLSLLQLCGPVKSWKRPQDPSNGTPKSFGFWEFESAEGVLRALRLLNKLNIDGQELMVNVNDATKEYVERYVKKKTENLKKNDTQAVGSEKDDESAQPPNANEDGKPDAELSKKEESKSGNKENHDVTNFITDEDREADREAVEKITNMIEERLKTRPLPPPPAQATPDGPANLTSEQSAKTRDGVDGDMVNNEAGDDKNDKETNSDNKATGEHDRPESPDRRHDRRSRERDRDRELKREKERELERYEREAERERIRKEREQRRRIEEAERHYEACLKDWEYREREKEKERQYEKEKEKERERKRRKEILYDEEDEDDDSRKRWRRSVLDEKRKKRLREKEDDLADRQKEDEEIAEAKRRAEEDQQQKRQRDALRLLSDHVMNGGERSMSTDDMTKEAKGIVTEQDTVADYGYEGHSGDSNPLSGMNDESTMASVAATDTRQSGNAPAKKLGFGLVGSGKRTTVPSVFHEEEDDDAHKDKKMRPLVPIDYSTEELQAVQPTGSGAPPPNLAAAAEFAKRLSNANSKEEKQDGERDRSRRSNEKSNHRDRDRDRNDEDGSHNKEESREKISDRDRDRDRGLEKLKTSDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHQLHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASHMLELLQSILDDEAEMFVLKMWRMLIFEIKKVETGLALRSKS 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1571 977 SMART pwi_2 893 966 IPR002483 GO:0006397
Dere09g1571 977 MobiDBLite consensus disorder prediction 120 135 - -
Dere09g1571 977 SMART rrm1_1 259 332 IPR000504 GO:0003723
Dere09g1571 977 Gene3D PWI domain 856 972 - -
Dere09g1571 977 MobiDBLite consensus disorder prediction 739 761 - -
Dere09g1571 977 MobiDBLite consensus disorder prediction 558 596 - -
Dere09g1571 977 CDD RRM_RBM25 258 340 IPR034268 -
Dere09g1571 977 MobiDBLite consensus disorder prediction 40 60 - -
Dere09g1571 977 SUPERFAMILY PWI domain 898 965 IPR036483 GO:0006397
Dere09g1571 977 Coils Coil 504 553 - -
Dere09g1571 977 MobiDBLite consensus disorder prediction 685 855 - -
Dere09g1571 977 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 336 IPR000504 GO:0003723
Dere09g1571 977 MobiDBLite consensus disorder prediction 694 719 - -
Dere09g1571 977 Coils Coil 556 584 - -
Dere09g1571 977 MobiDBLite consensus disorder prediction 795 855 - -
Dere09g1571 977 MobiDBLite consensus disorder prediction 379 425 - -
Dere09g1571 977 MobiDBLite consensus disorder prediction 609 668 - -
Dere09g1571 977 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 260 329 IPR000504 GO:0003723
Dere09g1571 977 SUPERFAMILY RNA-binding domain, RBD 233 336 IPR035979 GO:0003676
Dere09g1571 977 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 977 - -
Dere09g1571 977 FunFam RNA Binding Motif protein homolog 856 972 - -
Dere09g1571 977 MobiDBLite consensus disorder prediction 455 542 - -
Dere09g1571 977 MobiDBLite consensus disorder prediction 1 71 - -
Dere09g1571 977 Gene3D - 250 367 IPR012677 -
Dere09g1571 977 MobiDBLite consensus disorder prediction 1 31 - -
Dere09g1571 977 Pfam PWI domain 900 963 IPR002483 GO:0006397
Dere09g1571 977 MobiDBLite consensus disorder prediction 120 142 - -
Dere09g1571 977 Coils Coil 614 641 - -
Dere09g1571 977 MobiDBLite consensus disorder prediction 352 542 - -
Dere09g1571 977 ProSiteProfiles PWI domain profile. 880 977 IPR002483 GO:0006397
Dere09g1571 977 MobiDBLite consensus disorder prediction 609 650 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1571 09 20008375 20014982 Dere09g1571 09 20008375 20014982 ECH