Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1550 ATGTTTGGGGCCAACAATAGTAATCATGTTCTTCCTGTTTTCCTGGATGAAACTCAATTTCAGTATCAAACTAACGCAGCAAATCAACTGCAGTTGTTTGGAAACTTACCGGCTGGATGTAGTGTTGATCCAGTTAATTACTTTGGAAACGAGCATATTAGTTCTGTGATTCGGCCAAACAAACGAAGCAGGGAAATGGAAGATATGTCAAAACAGCAGAGGCTTCAAATTTCCTTAAATTACAATGTCTGTCAAGATGAACCTGATCGATCAGGAAGCATTCCAAACCTAAACCCTAATCCTGTATCAACAGGATTGAGGCTATCTTATGATGATGATGAGCGTAACTCATCTGTCACTTCTGCAAGTGGAAGTATGACTGGCGCACCTTCAATCATATTATCCCTTGGTGACAATATTAGAACTGAGCTTGATAGGCAGAAGGAAGAATTGGACCAGTATATTAAGATTCAGAAGGAACAATTGTCAAAAGGAGTTAGAGACATGAAACAAAAGCACATGGCATCTCTCCTTGCTGCGATTGAGAAAGGTGTAAGCAAGAAGCTAAGGGAAAAAGATGTGGAGATAGAGAACATGAACCGTAAAAACAGAGAGCTAGCAGAGAGAATAAAGCAGGTCGCCCTTGAAGCACAAAACTGGCATTACAGAGCAAAGTACAACGAGTCAGTTGTGAATGTTCTAAAGAACAATCTCCAGCAGGCAATCTCGCAGGGAGTTGAACAAGGGAAAGAAGGGTTTGGAGACAGTGAGGTTGATGATGCTGCCTCATACATTGATCCCAATAACTTGCTGAGCATCCATGGTGTGCGAATGAAATCTACTAGCAAGAAGCAAGGCATGGAGGAGCATATGATTTGCAGGGCATGCAAGGCGAAGGAGGTTTCGATGTTGTTGATGCCTTGTAGGCACCTGTGCTTATGTAAGGACTGTGATGGATATGTCAATGTTTGTCCTGTATGCCAAATGATAAAATCTGCTGGTGTCCAAGTGTATCTGTCTTAA 1023 0.4184 MFGANNSNHVLPVFLDETQFQYQTNAANQLQLFGNLPAGCSVDPVNYFGNEHISSVIRPNKRSREMEDMSKQQRLQISLNYNVCQDEPDRSGSIPNLNPNPVSTGLRLSYDDDERNSSVTSASGSMTGAPSIILSLGDNIRTELDRQKEELDQYIKIQKEQLSKGVRDMKQKHMASLLAAIEKGVSKKLREKDVEIENMNRKNRELAERIKQVALEAQNWHYRAKYNESVVNVLKNNLQQAISQGVEQGKEGFGDSEVDDAASYIDPNNLLSIHGVRMKSTSKKQGMEEHMICRACKAKEVSMLLMPCRHLCLCKDCDGYVNVCPVCQMIKSAGVQVYLS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1550 340 Coils Coil 189 216 - -
Dere09g1550 340 Pfam Zinc finger, C3HC4 type (RING finger) 291 328 - -
Dere09g1550 340 ProSiteProfiles Zinc finger RING-type profile. 293 328 IPR001841 -
Dere09g1550 340 Coils Coil 141 161 - -
Dere09g1550 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 340 IPR013083 -
Dere09g1550 340 MobiDBLite consensus disorder prediction 88 105 - -
Dere09g1550 340 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 53 337 IPR017066 -
Dere09g1550 340 MobiDBLite consensus disorder prediction 88 125 - -
Dere09g1550 340 CDD mRING-HC-C3HC5_CGRF1-like 292 327 - -
Dere09g1550 340 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 274 339 - -
Dere09g1550 340 PIRSF SBP1_RNase_bind 1 340 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1550 Dere-ChrDere09 19847042 19849659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1550 292 328 Miscellaneous Gene Families AT2G21380 43.243 1.02e-07 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1550 09 19847042 19849659 Dere09g1550 09 19847042 19849659 ECH