Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1535 ATGAAGAGAAACAGAAGTTGTTCTCTACTCTTTTTCTTCTTCTTATTGATTCTTGTCTTCGTCACCTCTTGCACCATTTCTGTGGAGGCAAGGAAGAGCCACACCAAAAAGACAAAACGTCATAAACATCATAAAGATCACAGTAATGGTGGTCCTACTCATTCTCCAAATCCTCCCCCACCTCCAACTCAAATCACCACTTTTGACGTTGTGTCTTTCGGAGCGAAGGCCAATGGAATTTCTGATGATTCAAAGGCACTTGTGGAAGCATGGAAAGCTGCCTGCAAAGTTGGTGTTGCTACAGTGAAAATTCCAGCAGATCACAGGTTCCTAATCAAGCCCATTACTTTAGAAGGCCCTTGTATGCCTCACCTTACTCTTCAGATAGATGGGACTCTCTTGGCCCCTGCTAAAGCATCTGCCTGGCCAAAATCCAGTTTATTTCAATGGATAAATTTCAAATGGGTCCACAACTTCACCATTCAGGGTTCTGGCACCATTGATGGCCAAGGCTCTAACTGGTGGACGTCCTCAAAGATTTATGATATGAAGAAGGGATATTATTCTAAACTGATTCCTGGCATGAAACCCACTGCTATAAGGTTCTATTCCGGCAACGATGTAACAGTTCGTGACATCAGAATCGTTAATAGTCCCCTGTGCCATCTAAAATTTGACAATTCAAAAGGGGTCAAAGTGACTAACATTACAATATCTTCCCCAGAAAATAGCCCAAACACTGATGGTATTCACTTGCAGAACTCACAGGATGTAGAGATTCAACATTCTAATATTGGAAGTGGAGATGACTGTGTGTCCATTCAAACTGGTTGCACAAATATTCACATTCATCACATTAACTGTGGCCCAGGACATGGTATAAGCTTAGGAGGATTAGGGAAAGACAAAAGTGTGGCATGTGTTTCCAACATCATGGTTAACGATGTCTCAATGCAAAACACACTATATGGAGTGAGGATCAAAACATGGCAGGGAGGGATTGGGACGGTAAAGAATGTGTCATTCTCAAGAGTGCAAGTGCAAGACGTGAAGGTTCCAATAATGATAGACCAATACTACTGTGACAAGCATATGTGCAAGAACCAGACAGGAACAGTGGTGATTTCTGGAGTGAAATTTGATAAAATACATGGGAGCTATGCAGTTCAGCCTATACATCTAGCTTGTAGCAATTCCATACCTTGCACTGATGTTGATCTAACTGATATTCAGCTTAAGCCATCTCTGAATTATAGAGGTTTTCAACAAGCTTTGTGTTGCAACTCTTATGGGAAATCACAAGGCCCCTTGATACCTTCAAGTATGGATTATTGCTTGAGAAGTGGCGGGGGTTATATCAAGAAAATAGCTAGGTCTCGTGATAGTGTATGTTATTGA 1398 0.4156 MKRNRSCSLLFFFFLLILVFVTSCTISVEARKSHTKKTKRHKHHKDHSNGGPTHSPNPPPPPTQITTFDVVSFGAKANGISDDSKALVEAWKAACKVGVATVKIPADHRFLIKPITLEGPCMPHLTLQIDGTLLAPAKASAWPKSSLFQWINFKWVHNFTIQGSGTIDGQGSNWWTSSKIYDMKKGYYSKLIPGMKPTAIRFYSGNDVTVRDIRIVNSPLCHLKFDNSKGVKVTNITISSPENSPNTDGIHLQNSQDVEIQHSNIGSGDDCVSIQTGCTNIHIHHINCGPGHGISLGGLGKDKSVACVSNIMVNDVSMQNTLYGVRIKTWQGGIGTVKNVSFSRVQVQDVKVPIMIDQYYCDKHMCKNQTGTVVISGVKFDKIHGSYAVQPIHLACSNSIPCTDVDLTDIQLKPSLNYRGFQQALCCNSYGKSQGPLIPSSMDYCLRSGGGYIKKIARSRDSVCY 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1535 465 MobiDBLite consensus disorder prediction 33 48 - -
Dere09g1535 465 PANTHER - 66 431 - -
Dere09g1535 465 FunFam polygalacturonase At1g48100 56 448 - -
Dere09g1535 465 SMART pbh1 308 329 IPR006626 -
Dere09g1535 465 SMART pbh1 228 254 IPR006626 -
Dere09g1535 465 SMART pbh1 337 358 IPR006626 -
Dere09g1535 465 SMART pbh1 278 298 IPR006626 -
Dere09g1535 465 SMART pbh1 255 276 IPR006626 -
Dere09g1535 465 SUPERFAMILY Pectin lyase-like 60 442 IPR011050 -
Dere09g1535 465 MobiDBLite consensus disorder prediction 32 63 - -
Dere09g1535 465 Gene3D - 60 446 IPR012334 -
Dere09g1535 465 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Dere09g1535 465 Pfam Glycosyl hydrolases family 28 99 414 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1535 Dere-ChrDere09 19708440 19711365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1535 1 464 Glycoside Hydrolase AT3G26610 63.002 0.0 605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1535 09 19708440 19711365 Dere09g1535 09 19708440 19711365 ECH