Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1399 ATGGAGATCCATCCGCCTGAAATCCTCCAAGCGCGGTATTCAGATTCTGTTCTTGGAGGAGTACCCTTTGGTGATGGTTCAACAGATTCGCACGGAATGCCTTTAGTGGAGGGAGCTCTCAGTGGGTCTTCACCATCTTCGCATTCTGAAACCCTAAATGACCGTTCTTTGGTTCTGTCTTTACCAAATCAAATGGGGGTTTCGGCGCCTCTACCTAATGAAGCCCAAGACCAGCAGATTATTGCTCCTTTGCCATCCAATATAGGCGTCTCTCATCCCGGCTTGGATTCCGAAACCCTAGTTGACTGTCCTCTGTTCCCCTCACATCCTCATTCAAATGGTTCCAGTACTATAAAGACCTTAGATGAGTGTTCACCATCTGCATCCATAGGAACCCCATATGATCTGCCTTTTTCGCCTTTGGTGCATCAATCATCAACTCTGGATGGGTCTTCACCGCCCATGGCAACGGCTGCCGAGAATAATTATTCCCGTACCATTTGTGATTCCGATAGAGAAGTTCAAGATGATCCAGAGCCAATTCGTTCAGTAAGCGATTTATCATATTATCCGTCTTCGTCATCTCCCCGACAGTGGCCTTCGTGGTCCTCTTCTTCACTGCCCTCTAAAGATGCATGGAATTCCGAGCTTACATCCGAAGAAATCTTGCTATCTTCTGATGATGCCAAGACGCATTTGAAAGATACGTTCTCTGCTTCTGGAATTGTACCATTCACGGTGGGTGCTGGGCTTGCAAATCTTGGCAACACATGCTTTCTCAATGCTATCTTGCAATGCTTTACACATACCGTGCCACTAATTCAGGGCCTTCGTACTTGCAGTCATTCTGCGCCTTGTGAAAGTGGCATTGATGGATTTTGTGTTCTCTGTGTTCTTCGTGACCACATTGAACTTTCATTAACGTCTGCTGGAGGAGTTCTCTCACCTTTGAAACTTGTTGACAATTTGAACTATTTTTCTTCTTTTTTTAGGAGATACCAGCAGGAGGATGCCCATGAATTTATGCAGTGTGTCTTAGATAAATTGGAAAGATGTTTTCTAGACTTAAAGAGAAAGAGTAAGAGTTGTGAACAAGTTGACAATCTAGTAGAGAAAATATTTGGAGGTCGCCTTATCAGCAAACTTCGATGTTGTAACTGTGGCCACTGTTCTGACACTTATGAGCCTCTCATTGACTTTAGCTTGGAGATAGAAAATGTGGATACCCTTCAAAGTGCTCTAAGATCTTTCACCAAGGTGGAAAAGATAGATGCAAAATTTAGATGTGATAGCTGCAGGGAAGAAGTATCCATGGAGAAGCAGCTTCTCTTAGATCAGACTCCTTCAGTTGCAGCATTTCATTTAAAAAGATTTAAGACAGATGGGGCATATGTTGAAAAGATTGATAATCATGTGGAGTTCCCTCTGGAGTTGGACTTGCAGCCTTACACCAGTTGTATCCAGAGCAATAATGTAGCATTGAAATATGATTTATATGCCATTGTCGTACATGTTGGATTTTCATCTACTTCTGGGCATTACTTTTGCTTTGTTCGCTCTGCACCTGACATGTGGTATAGGTTGGATGACTCCAAGGTTATTAGGGTCCTGGGAGATTCTGTGCTATCTCAGGAGGCATACATATTGCTCTATGCACAGCAGGGCACACCGTGGTTATCAAGTATAATGGATTCTTCAAGGCCATGCTTGGCCCCAAGCATTTTGAATACTTCTCCCAAGTCAGTTTTAGACAATGTTGATAGCTTGTATAGTTCAAATACTAGTATAGCAAATTTTGTAAGTAGTGGTGCAAATGAATCCAAAGAATTTGCCAAGCAGATGTCTGACTATCCTAGTGGAGGAATGAGTGAAATACTTGTGGTCAATGATATTATAGATGCTTACCACAACCCTGGACATTTTCATTCTGAGTTAAATCAGACCACTGTTACTTTTAATGATTCTAGAGATGATACCACCCATGCCCCTGTGCCGTGCAATGAGAGAAATGGTACCCTGACTGCTCTTGATGAAAACATTGGCCATCAGGAGGCTGTTGATATTAAAGTGAATGATGGTTTCCATCCTTTAACTCCTCCCAGCTCCCCAGGTCCAGATTCTAATTCTCCAGATCTGAGTTACTGCATTCCACGTGATCATTTGAAGATGGAGAATCGTGAGAGCTGCAGAAGACCATTGAATAAGTCTGCGGATGATTCTCAAAGAAAAGAAGCTGTGAGATATCTTAGCAAGAACGTGCATGGTTCAAGGAGATCCAAACTTCTGGGTGCGTTGACTGGGCCTTCTGGAGGTTCTTCGAGCAAGAAGAGGAAGAAAGTGGATTCAATGCCATGTAAAAAATTCATACCTCCTGGTGATCGTAAGAAATCAAACCATAGTTCTGTCATGTGTGCTTCAAGATGA 2424 0.429 MEIHPPEILQARYSDSVLGGVPFGDGSTDSHGMPLVEGALSGSSPSSHSETLNDRSLVLSLPNQMGVSAPLPNEAQDQQIIAPLPSNIGVSHPGLDSETLVDCPLFPSHPHSNGSSTIKTLDECSPSASIGTPYDLPFSPLVHQSSTLDGSSPPMATAAENNYSRTICDSDREVQDDPEPIRSVSDLSYYPSSSSPRQWPSWSSSSLPSKDAWNSELTSEEILLSSDDAKTHLKDTFSASGIVPFTVGAGLANLGNTCFLNAILQCFTHTVPLIQGLRTCSHSAPCESGIDGFCVLCVLRDHIELSLTSAGGVLSPLKLVDNLNYFSSFFRRYQQEDAHEFMQCVLDKLERCFLDLKRKSKSCEQVDNLVEKIFGGRLISKLRCCNCGHCSDTYEPLIDFSLEIENVDTLQSALRSFTKVEKIDAKFRCDSCREEVSMEKQLLLDQTPSVAAFHLKRFKTDGAYVEKIDNHVEFPLELDLQPYTSCIQSNNVALKYDLYAIVVHVGFSSTSGHYFCFVRSAPDMWYRLDDSKVIRVLGDSVLSQEAYILLYAQQGTPWLSSIMDSSRPCLAPSILNTSPKSVLDNVDSLYSSNTSIANFVSSGANESKEFAKQMSDYPSGGMSEILVVNDIIDAYHNPGHFHSELNQTTVTFNDSRDDTTHAPVPCNERNGTLTALDENIGHQEAVDIKVNDGFHPLTPPSSPGPDSNSPDLSYCIPRDHLKMENRESCRRPLNKSADDSQRKEAVRYLSKNVHGSRRSKLLGALTGPSGGSSSKKRKKVDSMPCKKFIPPGDRKKSNHSSVMCASR 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1399 807 MobiDBLite consensus disorder prediction 20 53 - -
Dere09g1399 807 MobiDBLite consensus disorder prediction 691 807 - -
Dere09g1399 807 MobiDBLite consensus disorder prediction 186 205 - -
Dere09g1399 807 Gene3D Cysteine proteinases 247 558 - -
Dere09g1399 807 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 129 554 - -
Dere09g1399 807 SUPERFAMILY Cysteine proteinases 248 552 IPR038765 -
Dere09g1399 807 FunFam Ubiquitin carboxyl-terminal hydrolase 20 245 557 - -
Dere09g1399 807 MobiDBLite consensus disorder prediction 167 205 - -
Dere09g1399 807 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 250 265 IPR018200 GO:0004843|GO:0006511
Dere09g1399 807 Pfam Ubiquitin carboxyl-terminal hydrolase 250 551 IPR001394 GO:0004843|GO:0016579
Dere09g1399 807 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 496 514 IPR018200 GO:0004843|GO:0006511
Dere09g1399 807 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 249 554 IPR028889 -
Dere09g1399 807 MobiDBLite consensus disorder prediction 717 751 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1399 Dere-ChrDere09 18005522 18009248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1399 250 584 Miscellaneous Gene Families AT4G31670 33.236 3.76e-50 185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1399 09 18005522 18009248 Dere09g1399 09 18005522 18009248 ECH