Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1370 ATGAGGTTTCCATGGTGCCGCGAATTGCGTATTGATGGGTGTATATTCATGTCGATAATATGTTTAGTTGAGTCCGCTTTGCTCCGCAGCAGAGTTCTCTCTTACAAACAACGATTATTTAGATTGTATTATGCTGCTTCTTCTGCAGTGATGTTGGAAGACCATATGTTTGACGAATGTCCAAGAGTTGATGATGCCAATGTAATGATCAATTTTGGAAGAAATAAATTGAGAGTTCCAATTCTCCGAAGAAAGCGCAATTTATTTCCTGTAGTGGTCAGGGTTATTAAATCCTTGAACTGGGAGGTTGCACTTGGAAGAGATGAAATTTTCTGGAAAGCTGTAAGGAGGTATGGATTTTCTCCTTCAATCACGTCCTTTAGAATTATCATTCACGTATATGCATCGGCAGGGATGCAAATGGAAGTATTTGCTTTGCTTAGAGATATTGTTGGATTCTATAGGAAGGCCAAGTTCGACACATTCAGATTGTTTTCAACTTTGCTAGATTCACCTTACCATGTGGAAAGATCAATTGTTGTGTTTGACACGCTCATAAAAGTACTTGCATCCTATTCTATGCTTGACAACGCATTGGATGTGTTTATGAGAATTAAGCATTTTGGGCTTGAACCTGATATATTGTCTTGCAATTTCTTGTTGAAATGCTTGGTAGAATCAAACAAGGTGAAGTTGGTTAGAAAATTATTTGATGAGCTAAAAATCTCAGGTCCAATCCCAAATATTTACACCTATACAATTATGATGAACTATTATTGTAGAGGAGATCTTGGGCAGGATGTAGATATTAACCAAGCTACTGGGATTTTAGAAGAAATATGGAGAAGTGGGGAATACCCAACTGCTATCACATATAGTATTTATATTCGTGGACTTTGTAAGCTTGGTTCTGTTGCTGCTGCTCTGCAATTAATTCGTGAGTTGAGGCATAGAAACCAGCCTCTCAATAGTCATTGTTTTAATGCTGTAATTTATGGATTTTGTCAACGAGGTGCGGTTCATGAAGCTTTACAAGTTTTGGAAGAAATGCAGAGCTCTGGAATATTGCCTGATGTTTGTAGCTACAGTATTTTGATTCATGCATTTTGCAAAAAGGGAGATGTAGAGAAAGGTTTTGACCTGATTGAGGAAATGGAACTTTATAATATTAAGCCCTCCATAGTTAGCTACACCTCCCTTATTCATGGTCTATGCAAAAGTAAACTGGTGGAATTTTCAATGTATATGTTTCGGAATATTGGTGCTTCTGGTTACGAATATGATCAGACTGCTTATGAAACTTTAATCAATGGATTTTGCAGTCAAGGTGATATGGAGTCAGCCAGCAAGCTTTTGAATGAGATGATAAGAAGTAATCTAGCTCCTACTTCTTTTAGTTGTCACAGTTTAATTGGAGGATTCTGCAAACTGGGACTCTTAGACAAGGCATTAGAAGTTTTAAGTTTGATGCTACAATATGGTGTCTTGCCAAATACCATCACTTGCAATTTTATTATCAATGGATTCTGCAGAGAAGGTCACATGATGGAAGCCTTAACACTATTGGAAGAGTTCCAAGACCAAGGAATTGACCTAAACTCACTTTCATATAATACAGTCATCTACAGGCTATGCGAAGGAAGACATTTGAAAAGAGCATGGGAGCTCTTCCCCAGAATGCTTAAAAGGAATGTGCTTCCTGGAGTTATTAATTATACTACTCTCATAGATGGTTTTGCTAAACAACCAAATCTAAAGAAGGCCTTATGGTTGTTCACAAAAATGCAAAAAGCTGGAGTCACTCCCAACTCCATTACATATACAGTCCTTATCAACATGTTTTGCCATGAGGGCAAAATGCGTGAAGCATTTAGCCTTTTTAAGGAAATGATAAAAAATGGTTTAGATCCGGATCAGATTTCATATACATCTTTAATAGCTGGCTTTTGTAGTACTAGAGATATGAGAAAGGCCTGGGCAGTATTCCAAGAAATGTTGAGGAAAGGCCTTTTGCCAGATGTAATTACTTACACATGTTTGATGGATGGATTTTGCAAGTTAAACAGGATAGATTTTGCCTGTTTTCTGTTTGACGAAATGAACAGAAATGCAGTTACTCCTAATGTTGTAACTTACACTGTTCTTATAGCTTGGTACCGTAGACATGGATATGTAGATCAGGCACATAAGTTATATCATGAAATGAAGGTAAAGGGTATTTCACCAGATGACATAACTCATAAGGTTCTTCTGAAAGCTGGTGGACCAGAAGCAAAGGTTCCATGA 2286 0.374 MRFPWCRELRIDGCIFMSIICLVESALLRSRVLSYKQRLFRLYYAASSAVMLEDHMFDECPRVDDANVMINFGRNKLRVPILRRKRNLFPVVVRVIKSLNWEVALGRDEIFWKAVRRYGFSPSITSFRIIIHVYASAGMQMEVFALLRDIVGFYRKAKFDTFRLFSTLLDSPYHVERSIVVFDTLIKVLASYSMLDNALDVFMRIKHFGLEPDILSCNFLLKCLVESNKVKLVRKLFDELKISGPIPNIYTYTIMMNYYCRGDLGQDVDINQATGILEEIWRSGEYPTAITYSIYIRGLCKLGSVAAALQLIRELRHRNQPLNSHCFNAVIYGFCQRGAVHEALQVLEEMQSSGILPDVCSYSILIHAFCKKGDVEKGFDLIEEMELYNIKPSIVSYTSLIHGLCKSKLVEFSMYMFRNIGASGYEYDQTAYETLINGFCSQGDMESASKLLNEMIRSNLAPTSFSCHSLIGGFCKLGLLDKALEVLSLMLQYGVLPNTITCNFIINGFCREGHMMEALTLLEEFQDQGIDLNSLSYNTVIYRLCEGRHLKRAWELFPRMLKRNVLPGVINYTTLIDGFAKQPNLKKALWLFTKMQKAGVTPNSITYTVLINMFCHEGKMREAFSLFKEMIKNGLDPDQISYTSLIAGFCSTRDMRKAWAVFQEMLRKGLLPDVITYTCLMDGFCKLNRIDFACFLFDEMNRNAVTPNVVTYTVLIAWYRRHGYVDQAHKLYHEMKVKGISPDDITHKVLLKAGGPEAKVP 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1370 761 NCBIfam pentatricopeptide repeat 675 708 IPR002885 -
Dere09g1370 761 NCBIfam pentatricopeptide repeat 536 568 IPR002885 -
Dere09g1370 761 NCBIfam pentatricopeptide repeat 326 359 IPR002885 -
Dere09g1370 761 NCBIfam pentatricopeptide repeat 431 463 IPR002885 -
Dere09g1370 761 NCBIfam pentatricopeptide repeat 290 319 IPR002885 -
Dere09g1370 761 NCBIfam pentatricopeptide repeat 395 428 IPR002885 -
Dere09g1370 761 NCBIfam pentatricopeptide repeat 605 638 IPR002885 -
Dere09g1370 761 NCBIfam pentatricopeptide repeat 710 743 IPR002885 -
Dere09g1370 761 NCBIfam pentatricopeptide repeat 572 603 IPR002885 -
Dere09g1370 761 NCBIfam pentatricopeptide repeat 361 393 IPR002885 -
Dere09g1370 761 NCBIfam pentatricopeptide repeat 500 533 IPR002885 -
Dere09g1370 761 NCBIfam pentatricopeptide repeat 640 674 IPR002885 -
Dere09g1370 761 NCBIfam pentatricopeptide repeat 466 499 IPR002885 -
Dere09g1370 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Dere09g1370 761 SUPERFAMILY HCP-like 517 698 - -
Dere09g1370 761 Gene3D Tetratricopeptide repeat domain 109 266 IPR011990 GO:0005515
Dere09g1370 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Dere09g1370 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Dere09g1370 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Dere09g1370 761 Gene3D Tetratricopeptide repeat domain 267 386 IPR011990 GO:0005515
Dere09g1370 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Dere09g1370 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 603 637 IPR002885 -
Dere09g1370 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Dere09g1370 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Dere09g1370 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Dere09g1370 761 Pfam PPR repeat family 430 476 IPR002885 -
Dere09g1370 761 Pfam PPR repeat family 567 616 IPR002885 -
Dere09g1370 761 Pfam PPR repeat family 212 261 IPR002885 -
Dere09g1370 761 Pfam PPR repeat family 497 545 IPR002885 -
Dere09g1370 761 Pfam PPR repeat family 323 371 IPR002885 -
Dere09g1370 761 Pfam PPR repeat family 707 753 IPR002885 -
Dere09g1370 761 Pfam PPR repeat family 637 686 IPR002885 -
Dere09g1370 761 Gene3D Tetratricopeptide repeat domain 543 652 IPR011990 GO:0005515
Dere09g1370 761 Gene3D Tetratricopeptide repeat domain 653 757 IPR011990 GO:0005515
Dere09g1370 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 708 742 IPR002885 -
Dere09g1370 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 673 707 IPR002885 -
Dere09g1370 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Dere09g1370 761 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 92 386 - -
Dere09g1370 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Dere09g1370 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 638 672 IPR002885 -
Dere09g1370 761 Pfam PPR repeat 290 318 IPR002885 -
Dere09g1370 761 Pfam PPR repeat 180 209 IPR002885 -
Dere09g1370 761 Pfam PPR repeat 395 420 IPR002885 -
Dere09g1370 761 Gene3D Tetratricopeptide repeat domain 458 528 IPR011990 GO:0005515
Dere09g1370 761 Gene3D Tetratricopeptide repeat domain 387 457 IPR011990 GO:0005515
Dere09g1370 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1370 Dere-ChrDere09 17761495 17763877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1370 270 753 Glycosyltransferase AT1G05670 30.658 2.03e-75 257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1370 09 17761495 17763877 Dere09g1370 09 17761495 17763877 ECH