Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1339 ATGTCTGCTCTGCAATACCTAGAGTCGCTGCGCAACGCGCACCCTGAGCTCTCTGATTGGTATAATTCGCTTGCAGATCTGTACCAGAAGAAGCTCTGGCACCAGCTCACTCTGAAGCTCGAGCAGTTTGTAGCTCTAGCTGTTTTCCAGGCTGGCGATGCTCTGATCCAGTTATATCACAATTTCATAACAGACTTTGAGACTAAAATCAATCTTCTCAAGCTTGCACATTTTGCTGTGATAGTTTCCCGGCAGTATTCTGAAAAAGAAGCTGCCATTGGTTATCTTGAAGGAGTCATTGAAAAACTTCAAGCCACTAAAGAGCAGCGCATAGAAGAACCTATTCTTTACATTAAGTTGCAGATAGCCTTGTTTAAGCTTGAGCAAGGTGACCAAAAGGAATGCAAGAAACTTCTAGATGATGGAAAGAGTACACTGGACAGCATGACAGATATTGATCCAACAGTATATGCTAGCTATTACTGGGTATCATCTCAGTATTATAAGTATCGCCAGGAATTTGCTGAGTTCTACAAAAGTGCTCTTCTCTATCTGGCATATAAATCGGTGGAGTCTCTCTCAGATTCATTCAAGCAGGATTTGGCATTTGATTTGTCCCTTTCTGCTCTTCTGGGAGATAACATTTACAATTTTGGGGAGCTTCTTGCTCATCCTATTATAAAAAGTCTTCTGGGTACAAAGGTGGAATGGCTCTACTATATTCTTCAGGCATTCAATTCTGGCGATTTAGTTGGCTATCAAGAATTATGTCGGGTGCATAATGCTGCTTTAAGGGCTCAGCCAGCACTAGTTCAGAATGAGCAAAGGTTGTTGGAAAAGATCAATATCCTCTGCTTGATGGAGATTATATTCAGTCGGCCTTCTGAAGACCGAACTATTCCCTTGAATGTTATTGCTGAGCGTACAAAACTTTCTGTGGAGGATGTGGAACATCTCCTGATGAAGAGCCTTTCTGTTCATCTGATTGAGGGTATAATTGATCAAGTGGAAGGCACAGTTCATGTTACCTGGGTGCAGCCAAGAGTTCTTGGAATCCCACAGATTAAATCCTTACGGGATCGACTGGACAATTGGATGGGTAAAGTACACACTGCATTGTTATCCATCGAGGCAGAAACACCTGATCTAATTGGGTCATGA 1161 0.4229 MSALQYLESLRNAHPELSDWYNSLADLYQKKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYSEKEAAIGYLEGVIEKLQATKEQRIEEPILYIKLQIALFKLEQGDQKECKKLLDDGKSTLDSMTDIDPTVYASYYWVSSQYYKYRQEFAEFYKSALLYLAYKSVESLSDSFKQDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNSGDLVGYQELCRVHNAALRAQPALVQNEQRLLEKINILCLMEIIFSRPSEDRTIPLNVIAERTKLSVEDVEHLLMKSLSVHLIEGIIDQVEGTVHVTWVQPRVLGIPQIKSLRDRLDNWMGKVHTALLSIEAETPDLIGS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1339 386 Pfam PCI domain 238 343 IPR000717 -
Dere09g1339 386 Gene3D - 218 343 - -
Dere09g1339 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 272 365 IPR000717 -
Dere09g1339 386 ProSiteProfiles PCI domain profile. 176 347 IPR000717 -
Dere09g1339 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 4 384 IPR035298 -
Dere09g1339 386 FunFam 26S proteasome non-ATPase regulatory subunit 13 homolog B 174 373 - -
Dere09g1339 386 SUPERFAMILY "Winged helix" DNA-binding domain 274 348 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1339 Dere-ChrDere09 17442819 17447962 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1339 09 17442819 17447962 Dere09g1339 09 17442819 17447962 ECH