Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1249 ATGGCGAGTGAATCCGCCTCGAAACCTCCCTCAACTTCGTCGCCAACTGCTGTGGAATCTTACATTGGGAGCTTCATAAGTTTGATTTCTAAGTACGAGATTCGTTACGAAGGCGTTTTGTACCACCTCAACATCCAGGATTCCACCATTGGCTTGAAGGGTGTCAGGTCTTATGGAACAGAGGGGAGAAGAAAAGATGGTCCACAAGTTCCTCCGAGTGATAAGGTTTATGAATACATTCTTTTCCGAGGAAATGACATTAAGGATTTGCAGGTCAAGTCTCCCTTTACATCTGCCAAAGCAGAAGAGCAGATATTTAGTGATCCAGCTATTATTCAGTCACAATATTCTGGAGCGCCTTCAAGTTCTCCTTTGGCTTCAGTTGGTGGGAGAAGTTCGACTGAATCAATTCAAGGGCAAGATACTCCTGCTATGACCAGTAGAGACCTTCCTGTTGGGTTGCCTGCTCATCAATCTGGAATACAGCTGGGGCCAACAGATCAGTCTGCTGCTACTCAAGTTTCTGGAGCTCAATCTTTCTCAATGCCTATGTATTGGGCAGACTATAGTGGAACATCCGGCAGTAGCTCTCATCCTCTGTGGCAATCTGGTTCTCTTCAGCCCCCTTCAGTGGTGTCACCTTTAAATATGCAGAGTTTGATGCAAACTCCGGAAACTCAGGCACCTTTAAAAGTGGGCAGGACTACTTTATCAGAGCGTGGTGATCCTGTATCTTCTGTTACTACTTCATCTCTTGTAAATCCAAGTTATGAACCCTCTCCTACCTCTTTACAAACTTCTGATTTTCTAGATATTCCATCTCTTATGTCCTCTAAGACACCAATGCCATATCATGCATCCATGGCTTTATCAACGTTGCCTTCATTTTCTTCACCTGTCCAAGGCATAAATTCTACCAAAGATCAATTTTCTGGAAAAATTTCTCCTGACATGAGATCAAGCCTTCCTGGACAATCTGTCCATCATTCTGCTTCTCCATCTGTAGATTCTACTTCAGGCCCCTTGCCAAGACATCCTTCTTTGTTAACTCCAGATCAATTTGCTCAGCCTAGACAGAATTTATTTTCTTTAGCACAGAACCTGACCCCTGATCAGAAGCACATGGTTTCTCTGACACCATCACCCTCTAGCTCCTCTTTTTTAGTACCTTCTACTGCATTTCAAGCACCATTGTTGCCATTGCCACCATTGCCAACTTCAGTGCACAAGCCTCAGTACTCAGCTTCACAGTTCAGTGAAGAGTTTGATTTTGAGGCCATGAATGAAAAGTTCAGAAAGGATGAAGTATGGGGTTCTCTGGGGAGGGCATCTAAGACATTAGAGGGAGTGGAGCATAATGCTCCCACTGACAGTTTGGGTGACAGAGAGTGTCGTGGGCTGATACCTAACCCAGACCCAAAGCCTGCATATAAGAAAGATGACTTTTTTGACACAATTTCTTGCAACTCTATGACTCATGGATCAAGGAATGGACAGAATCGCCTATCTGAGAGAATGAAGCTGGATTCTGAGACATTTGGCAATTTCCATCAGAGGCCTAATGTGGGTTATGGTTCCTATGGCACTGGACGCGGTGAATATTACCAGGGCCCATACAATATGGGAAGGGGTTATGGCTATGGTGGGAGAGGGCGTGGGAGGAACCTGCCTTTCTAG 1677 0.4484 MASESASKPPSTSSPTAVESYIGSFISLISKYEIRYEGVLYHLNIQDSTIGLKGVRSYGTEGRRKDGPQVPPSDKVYEYILFRGNDIKDLQVKSPFTSAKAEEQIFSDPAIIQSQYSGAPSSSPLASVGGRSSTESIQGQDTPAMTSRDLPVGLPAHQSGIQLGPTDQSAATQVSGAQSFSMPMYWADYSGTSGSSSHPLWQSGSLQPPSVVSPLNMQSLMQTPETQAPLKVGRTTLSERGDPVSSVTTSSLVNPSYEPSPTSLQTSDFLDIPSLMSSKTPMPYHASMALSTLPSFSSPVQGINSTKDQFSGKISPDMRSSLPGQSVHHSASPSVDSTSGPLPRHPSLLTPDQFAQPRQNLFSLAQNLTPDQKHMVSLTPSPSSSSFLVPSTAFQAPLLPLPPLPTSVHKPQYSASQFSEEFDFEAMNEKFRKDEVWGSLGRASKTLEGVEHNAPTDSLGDRECRGLIPNPDPKPAYKKDDFFDTISCNSMTHGSRNGQNRLSERMKLDSETFGNFHQRPNVGYGSYGTGRGEYYQGPYNMGRGYGYGGRGRGRNLPF 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1249 558 MobiDBLite consensus disorder prediction 300 344 - -
Dere09g1249 558 ProSiteProfiles FFD box profile. 475 490 IPR025761 -
Dere09g1249 558 ProSiteProfiles Sm domain profile. 13 96 IPR047575 GO:0003723
Dere09g1249 558 MobiDBLite consensus disorder prediction 235 267 - -
Dere09g1249 558 PANTHER SCD6 PROTEIN-RELATED 17 554 - -
Dere09g1249 558 MobiDBLite consensus disorder prediction 116 144 - -
Dere09g1249 558 Gene3D - 13 97 - -
Dere09g1249 558 ProSiteProfiles DFDF domain profile. 410 446 IPR025762 -
Dere09g1249 558 Pfam Scd6-like Sm domain 21 94 IPR025609 -
Dere09g1249 558 MobiDBLite consensus disorder prediction 451 476 - -
Dere09g1249 558 SMART LSM14_2 17 116 IPR025609 -
Dere09g1249 558 MobiDBLite consensus disorder prediction 300 352 - -
Dere09g1249 558 CDD LSm14_N 18 92 IPR025609 -
Dere09g1249 558 SUPERFAMILY Sm-like ribonucleoproteins 20 95 IPR010920 -
Dere09g1249 558 SMART FDF_2 416 517 IPR019050 -
Dere09g1249 558 Pfam FDF domain 417 515 IPR019050 -
Dere09g1249 558 ProSiteProfiles TFG box profile. 497 517 IPR025768 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1249 Dere-ChrDere09 16414064 16419245 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1249 09 16414064 16419245 Dere09g1249 09 16414064 16419245 ECH