Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1242 ATGGCAGCGGCTAGGGTATTCGGGGCATACAGTAGAGCACTGATGGCGGCGGCGGCGAAGGGGGCTGCGTCCGGCGTAAAGACTGCGGCCAAGACGGTCTCACCGAAGAGTCGAGCTAACATCGGTTTACAGAAGGTGGTTCCTGTCTCTCCGCAGCTCGGCAAGTTTCTAGGTGCATCTGAAGCTTCGCGCACCGAAGCCATCAAGAAAGTTTGGGAACACATCAAGCTCCACAATCTTCAGAATCCTACAAATAAGAAGGAGATTGTTTGTGATGAGAAGTTGAAGACCATCTTCAACGGAAAAGATAGAGTAGGGTTCACAGAGATTGCCGGATTTCTGTCTAAACATTTTGTGAAATCAGGCTGA 369 0.5041 MAAARVFGAYSRALMAAAAKGAASGVKTAAKTVSPKSRANIGLQKVVPVSPQLGKFLGASEASRTEAIKKVWEHIKLHNLQNPTNKKEIVCDEKLKTIFNGKDRVGFTEIAGFLSKHFVKSG 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1242 122 Gene3D SWIB/MDM2 domain 37 122 IPR036885 -
Dere09g1242 122 SUPERFAMILY SWIB/MDM2 domain 42 120 IPR036885 -
Dere09g1242 122 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 26 119 - -
Dere09g1242 122 SMART swib_2 43 122 IPR019835 -
Dere09g1242 122 ProSiteProfiles SWIB/MDM2 domain profile. 42 120 IPR003121 -
Dere09g1242 122 Pfam SWIB/MDM2 domain 47 118 IPR003121 -
Dere09g1242 122 CDD SWIB-MDM2_like 47 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1242 Dere-ChrDere09 16294235 16295895 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Dere09g1242 SWIB 4.2e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1242 09 16294235 16295895 Dere09g1242 09 16294235 16295895 ECH