Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1158 ATGGGAAAAACTGAGTTTGAGTGCTCGGGTAATCACATACCTTTGACACCTATCACTTTTTTGGAACGAGCAGCCACGGTGTACGCTGATAAGCTATCCATCGTCTACGGTGATGTCAGGTTTTCATGGAAAGAAACCCATCAAAGATGCCTCAAGCTCGCTTCTGCTTTGGTCAGCTTGGGGATTTCTCAGCATGATGTTGTTGCAGCTTTGGCACCAAATATTCCAGAGCACTATGAGCTGCATTTTGCAGTTCCTATGTCAGGGGCAGTTCTTTCTGCACTCAACATCAAACTGGATGCAACAACATTGGCTGTGAAATTGGAACAATTAGAGGCAAAAATTATGTTCGTGGATTGTCAGTTTGTTGAAGCTGTTCTTAATGCGTTTGACTTAATGTCTCAGAGGAGATGCAAACCACCCCTCATTGTTCTTATACCAGATTGTAACCAAAAACCATCTTTCGCTATTTATAATCTCCCACCAGATACCCTGAACTTCAATGAACTACTTGCAAAAGGACAAGCAGATTTCGAGACTAGAATGCCAAGCAATGAATGTAACCCTATATCAGTGAATTATACATCAGGCTCCACAGGGACTCCTAAAGGAGCTGTTTATAGTCATAGAGGTGCCTATCTTAATTCATTGGAAGCAATCTCTCGTTTCGACATGAAACCAATGCCTGTGTTTCTATGGACAGTGGACATGTTTCGCTGCAATGGGTGGTGCTTCACTTGGGCAATGGCTGCTCTTGGTGGCACCAATATTTGTCTCAGAAATGTCTCAGCAAAAGCCATTTTTGATGCAATCTCTCTTCACAAGTTAACCCATTTTTGTGGTGCACCCGCCCTTTTGAACATAATTGCAGATGCACCACCCAGTGACCAGAGGTCTCTGCCCTTCGGTGTGAGTGTCACAGTTGCTGGTGTGCTACCACCATTCCAAGTTCTCGACAAGGTAGCAGAACTTGGGTTCAATGTGAGCGTTGGATATGGCATGACAGAAGCTATGGGTCCTGTATTGGTGAGACCTTGGAAACCCAATTCCAGTGATGAACTCACAGAACAACTTAGTTATGGTGATCATGGGCTTCCAATCATTATGATGGAAGGGATTGACGTGAAAGATCCAGAGAGTATGAAGAGTACTCCTTTTGATGGGAAAACGATTGGTGAGATAATGTGCAGAGGCAACAATTTGATGCTAGGGTACCTTAAAAATCCAAAAGCAACCGAAGAAGCTTTTAGGGGAGGATGGTATAGGACAGGGGACCTTGCAGTGAAGCTAAGGGATGGCTCTATAAGATTGAAGGATAGGGCAAAGGATATGATATATTCAAAAGGAGAGGCTGTGAGCTCACTTGAGGTAGAGGCAGTGTTGTTGAGTCACCCAAAGGTCTTGAATGCTGCTGTTGTAGGGAAATATGATGACCATTTGGTAGAGTCCCCCTTTGCAATTATCAAATTGAAGGAAGGATGTGGCGCCACTGTGGAAGATATTATGAATTTTTGTGAAACTAGGTTGGATACTCATATGGTTCCTAAGAGTGTAGTTTTTGGGGATTTGCCTGTTAACTCAACTGGGAAGGTACAAAAATTTCTCATCAGAGAGATGATCAAATCCGGTGAATGA 1635 0.4336 MGKTEFECSGNHIPLTPITFLERAATVYADKLSIVYGDVRFSWKETHQRCLKLASALVSLGISQHDVVAALAPNIPEHYELHFAVPMSGAVLSALNIKLDATTLAVKLEQLEAKIMFVDCQFVEAVLNAFDLMSQRRCKPPLIVLIPDCNQKPSFAIYNLPPDTLNFNELLAKGQADFETRMPSNECNPISVNYTSGSTGTPKGAVYSHRGAYLNSLEAISRFDMKPMPVFLWTVDMFRCNGWCFTWAMAALGGTNICLRNVSAKAIFDAISLHKLTHFCGAPALLNIIADAPPSDQRSLPFGVSVTVAGVLPPFQVLDKVAELGFNVSVGYGMTEAMGPVLVRPWKPNSSDELTEQLSYGDHGLPIIMMEGIDVKDPESMKSTPFDGKTIGEIMCRGNNLMLGYLKNPKATEEAFRGGWYRTGDLAVKLRDGSIRLKDRAKDMIYSKGEAVSSLEVEAVLLSHPKVLNAAVVGKYDDHLVESPFAIIKLKEGCGATVEDIMNFCETRLDTHMVPKSVVFGDLPVNSTGKVQKFLIREMIKSGE 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1158 544 Gene3D - 442 543 IPR045851 -
Dere09g1158 544 CDD ttLC_FACS_AEE21_like 12 538 - -
Dere09g1158 544 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
Dere09g1158 544 SUPERFAMILY Acetyl-CoA synthetase-like 12 542 - -
Dere09g1158 544 Pfam AMP-binding enzyme C-terminal domain 456 530 IPR025110 -
Dere09g1158 544 Gene3D - 5 441 IPR042099 -
Dere09g1158 544 PANTHER ACYL-ACTIVATING ENZYME 5 542 - -
Dere09g1158 544 Pfam AMP-binding enzyme 21 446 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1158 Dere-ChrDere09 15288348 15293532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1158 80 542 Miscellaneous Gene Families AT1G20560 48.602 5.88e-159 460
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1158 09 15288348 15293532 Dere09g1158 09 15288348 15293532 ECH