Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1027 ATGGCGTCCGAGAACAACTCCGCCGGATCTGGATCTGGATCTACTCCCGCGGCCGCTAATGGCGACGTGGTTCATCCCCACAAGGTGGCATTGATCACCGGCATCACCGGCCAAGATGGTTCCTACCTCACTGAATTCCTCCTCAATAAAGGCTACGAAGTCCATGGCCTTATTCGGCGATCCTCCAACTTCAACACCCAACGAATTAATCACATCTACATCGACCCCCACAACGCCCACAAGGCTCGAATGAAGCTTCACTATGCGGATCTCTCCGATGCCTCTTCCCTCCGTCGATGGCTCGACACCATCCTCCCCGATGAGGTATATAATCTCGCTGCTCAGTCTCATGTCGCTGTTTCCTTCGAAATCCCCGATTACACCGCTGATGTTGTCGCCACTGGTGCGCTCCGACTCTTGGAGGCTGTTCGCTCCCACATCGCCGCCACCGGTCGCAGCTATATTCGCTATTACCAGGCCGGATCATCCGAAATGTTTGGTTCTACCCCACCTCCGCAATCCGAGACTTCCCCATTTCATCCTCGATCTCCTTATGCGGCCTCGAAATGCGCCGCGCATTGGTACACCGTTAATTATCGCGAGGCTTATGGGCTCTTTGCCTGCAATGGGATACTCTTCAATCACGAATCGCCGAGGCGGGGTGAGAATTTCGTGACCCGGAAGATCACGCGGGCTGTGGGTCGGATCAAGATCGGCTTGCAGCGGAAATTATTCTTGGGGAATTTGCAGGCTTCGAGGGATTGGGGTTTTGCAGGGGATTATGTGGAGGCTATGTGGATGATGCTGCAGCAGGATAAGCCTGATGATTACGTTGTAGCCACGGAGGAATCCCACACAGTGGAAGAGTTCTTGGAGGTTGCATTTGGCCACGTGGGTTTGAATTGGAAGGATCATGTGGAGATTGACAAGAGGTACTTTAGGCCTGCGGAGGTTGATAATCTCAAGGGGGATTCAAGCAAGGCGAGGAAAGTGCTTGGATGGAAGCCTAAGGTGGGATTTGAGCAGTTGGTGAAGATGATGGTGGACGAGGACATTGAATTGGCCAAGAGGGAGAAGGTGCTTGTTGATGCTGGCTACCTGGATGCTCAGCAACAACCTTGA 1122 0.5321 MASENNSAGSGSGSTPAAANGDVVHPHKVALITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQRINHIYIDPHNAHKARMKLHYADLSDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIAATGRSYIRYYQAGSSEMFGSTPPPQSETSPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQRKLFLGNLQASRDWGFAGDYVEAMWMMLQQDKPDDYVVATEESHTVEEFLEVAFGHVGLNWKDHVEIDKRYFRPAEVDNLKGDSSKARKVLGWKPKVGFEQLVKMMVDEDIELAKREKVLVDAGYLDAQQQP 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1027 373 PANTHER GDP-MANNOSE 4,6-DEHYDRATASE 14 363 IPR006368 GO:0008446|GO:0019673
Dere09g1027 373 FunFam GDP-mannose 4,6-dehydratase 31 229 - -
Dere09g1027 373 MobiDBLite consensus disorder prediction 1 20 - -
Dere09g1027 373 MobiDBLite consensus disorder prediction 1 17 - -
Dere09g1027 373 Gene3D - 31 337 - -
Dere09g1027 373 Hamap GDP-mannose 4,6-dehydratase [gmd]. 28 357 IPR006368 GO:0008446|GO:0019673
Dere09g1027 373 Gene3D - 221 347 - -
Dere09g1027 373 CDD GDP_MD_SDR_e 29 353 - -
Dere09g1027 373 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 353 IPR036291 -
Dere09g1027 373 Pfam GDP-mannose 4,6 dehydratase 31 347 IPR016040 -
Dere09g1027 373 NCBIfam GDP-mannose 4,6-dehydratase 28 354 IPR006368 GO:0008446|GO:0019673
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1027 25 213 Miscellaneous Gene Families AT4G12250 28.934 3.09e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1027 09 13158646 13159767 Dere09g1027 09 13158646 13159767 ECH